[Bioc-devel] [BioC] package for human ST gene arrays?

[Benilton Carvalho]

Affymetrix has the parsers on their SDK, which is used by affxparser.

It would be great if the PGF parsers were exposed on affxparser....

b

On Oct 28, 2007, at 5:11 PM, cstrato wrote:

> Dear Ben
>
> Reading your response I do not have an answer, but a question:
> Do you think it is worth sticking with unsupported CDF-files?
> Wouldn't it be better to move somehow to PGF-files just in
> case that in the future Affymetrix may no longer supply CDF-files?
>
> Using PGF-files would have the advantage, that people need
> no longer provide alternative CDF-files but only updated
> annotation files.
>
> I have no solution, but maybe the information from CDF and
> PGF files could be moved to SQLite, just as the annotation
> did?
>
> Best regards
> Christian
>
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