Survival Analysis


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Documentation for package ‘survival’ version 2.43-1

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A B C D E F G H I J K L M N O P Q R S T U V X Y misc

-- A --

aareg Aalen's additive regression model for censored data
aeqSurv Adjudicate near ties in a Surv object
agreg.fit Cox model fitting functions
aml Acute Myelogenous Leukemia survival data
anova.coxph Analysis of Deviance for a Cox model.
anova.coxphlist Analysis of Deviance for a Cox model.
anova.survreg Regression for a Parametric Survival Model
anova.survreglist Regression for a Parametric Survival Model
anyDuplicated.Surv Methods for Surv objects
as.character.Surv Methods for Surv objects
as.data.frame.Surv Methods for Surv objects
as.integer.Surv Methods for Surv objects
as.matrix.Surv Methods for Surv objects
as.numeric.Surv Methods for Surv objects
attrassign Create new-style "assign" attribute
attrassign.default Create new-style "assign" attribute
attrassign.lm Create new-style "assign" attribute

-- B --

basehaz Alias for the survfit function
bladder Bladder Cancer Recurrences
bladder1 Bladder Cancer Recurrences
bladder2 Bladder Cancer Recurrences

-- C --

c.Surv Methods for Surv objects
cancer NCCTG Lung Cancer Data
cch Fits proportional hazards regression model to case-cohort data
cgd Chronic Granulotamous Disease data
cgd.raw Chronic Granulotamous Disease data
cgd0 Chronic Granulotomous Disease data
cipoisson Confidence limits for the Poisson
clogit Conditional logistic regression
cluster Identify clusters.
colon Chemotherapy for Stage B/C colon cancer
concordance Compute the concordance statistic for data or a model
concordance.coxph Compute the concordance statistic for data or a model
concordance.formula Compute the concordance statistic for data or a model
concordance.lm Compute the concordance statistic for data or a model
concordance.survreg Compute the concordance statistic for data or a model
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
coxph Fit Proportional Hazards Regression Model
coxph.control Ancillary arguments for controlling coxph fits
coxph.detail Details of a Cox Model Fit
coxph.fit Cox model fitting functions
coxph.getdata Fit Proportional Hazards Regression Model
coxph.object Proportional Hazards Regression Object
coxph.penalty Fit Proportional Hazards Regression Model
coxph.wtest Compute a quadratic form

-- D --

diabetic Ddiabetic retinopathy
dsurvreg Distributions available in survreg.
duplicated.Surv Methods for Surv objects

-- E --

extractAIC.coxph.penal Proportional Hazards Regression Object

-- F --

finegray Create data for a Fine-Gray model
flchain Assay of serum free light chain for 7874 subjects.
format.Surv Methods for Surv objects
frailty Random effects terms
frailty.gamma Random effects terms
frailty.gaussian Random effects terms
frailty.t Random effects terms

-- G --

genfan Generator fans

-- H --

head.Surv Methods for Surv objects
heart Stanford Heart Transplant data

-- I --

is.na.Surv Methods for Surv objects
is.ratetable Verify that an object is of class ratetable.
is.Surv Create a Survival Object

-- J --

jasa Stanford Heart Transplant data
jasa1 Stanford Heart Transplant data

-- K --

kidney Kidney catheter data

-- L --

labels.survreg Regression for a Parametric Survival Model
length.Surv Methods for Surv objects
leukemia Acute Myelogenous Leukemia survival data
levels.Surv Return the states of a multi-state Surv object
levels.tcut Factors for person-year calculations
lines.survexp Add Lines or Points to a Survival Plot
lines.survfit Add Lines or Points to a Survival Plot
logan Data from the 1972-78 GSS data used by Logan
logLik.coxph logLik method for a Cox model
logLik.survreg logLik method for a Cox model
lung NCCTG Lung Cancer Data

-- M --

Math.ratetable Verify that an object is of class ratetable.
Math.Surv Methods for Surv objects
mean.Surv Methods for Surv objects
median.Surv Methods for Surv objects
mgus Monoclonal gammopathy data
mgus1 Monoclonal gammopathy data
mgus2 Monoclonal gammopathy data
model.frame.coxph Model.frame method for coxph objects
model.frame.survreg Regression for a Parametric Survival Model
model.matrix.coxph Model.matrix method for coxph models
myeloid Acute myeloid leukemia

-- N --

names.Surv Methods for Surv objects
names<-.Surv Methods for Surv objects
neardate Find the index of the closest value in data set 2, for each entry in data set one.
nwtco Data from the National Wilm's Tumor Study

-- O --

Ops.ratetable Verify that an object is of class ratetable.
Ops.Surv Methods for Surv objects
order.Surv Sorting order for Surv objects
ovarian Ovarian Cancer Survival Data

-- P --

pbc Mayo Clinic Primary Biliary Cirrhosis Data
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
plot.aareg Plot an aareg object.
plot.cox.zph Graphical Test of Proportional Hazards
plot.Surv Methods for Surv objects
plot.survfit Plot method for 'survfit' objects
points.survfit Add Lines or Points to a Survival Plot
predict.coxph Predictions for a Cox model
predict.coxph.penal Predictions for a Cox model
predict.survreg Predicted Values for a 'survreg' Object
predict.survreg.penal Predicted Values for a 'survreg' Object
print.aareg Print an aareg object
print.cox.zph Test the Proportional Hazards Assumption of a Cox Regression
print.coxph Proportional Hazards Regression Object
print.coxph.null Fit Proportional Hazards Regression Model
print.coxph.penal Fit Proportional Hazards Regression Model
print.ratetable Rate table structure
print.summary.coxph Print method for summary.coxph objects
print.summary.survexp Print Survexp Summary
print.summary.survfit Print Survfit Summary
print.summary.survreg Regression for a Parametric Survival Model
print.survdiff Test Survival Curve Differences
print.survexp Compute Expected Survival
print.survfit Print a Short Summary of a Survival Curve
print.survreg Parametric Survival Model Object
print.survreg.penal Regression for a Parametric Survival Model
pspline Smoothing splines using a pspline basis
psplineinverse Smoothing splines using a pspline basis
psurvreg Distributions available in survreg.
pyears Person Years

-- Q --

qsurvreg Distributions available in survreg.
quantile.Surv Methods for Surv objects
quantile.survfit Quantiles from a survfit object
quantile.survfitms Quantiles from a survfit object

-- R --

ratetable Rate table structure
ratetableDate Convert date objects to ratetable form
rats Rat treatment data from Mantel et al
rats2 Rat data from Gail et al.
rep.int.Surv Methods for Surv objects
rep.Surv Methods for Surv objects
rep_len.Surv Methods for Surv objects
residuals.coxph Calculate Residuals for a 'coxph' Fit
residuals.coxph.null Calculate Residuals for a 'coxph' Fit
residuals.coxph.penal Calculate Residuals for a 'coxph' Fit
residuals.survreg Compute Residuals for 'survreg' Objects
residuals.survreg.penal Compute Residuals for 'survreg' Objects
retinopathy Diabetic Retinopathy
rev.Surv Methods for Surv objects
rhDNase rhDNASE data set
ridge Ridge regression
rsurvreg Distributions available in survreg.

-- S --

solder Data from a soldering experiment
sort.Surv Sorting order for Surv objects
stanford2 More Stanford Heart Transplant data
statefig Draw a state space figure.
strata Identify Stratification Variables
summary.aareg Summarize an aareg fit
summary.coxph Summary method for Cox models
summary.coxph.penal Fit Proportional Hazards Regression Model
summary.pyears Summary function for pyears objecs
summary.ratetable Rate table structure
Summary.Surv Methods for Surv objects
summary.survexp Summary function for a survexp object
summary.survfit Summary of a Survival Curve
summary.survreg Parametric Survival Model Object
Surv Create a Survival Object
survConcordance Compute a concordance measure.
survConcordance.fit Compute a concordance measure.
survdiff Test Survival Curve Differences
survexp Compute Expected Survival
survexp.fit Compute Expected Survival
survexp.mn Census Data Sets for the Expected Survival and Person Years Functions
survexp.object Expected Survival Curve Object
survexp.us Census Data Sets for the Expected Survival and Person Years Functions
survexp.usr Census Data Sets for the Expected Survival and Person Years Functions
survfit Create survival curves
survfit.coxph Compute a Survival Curve from a Cox model
survfit.formula Compute a Survival Curve for Censored Data
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
survfit.object Survival Curve Object
survfitcoxph.fit A direct interface to the 'computational engine' of survfit.coxph
survfitms.object Survival Curve Object
survobrien O'Brien's Test for Association of a Single Variable with Survival
survReg Regression for a Parametric Survival Model
survreg Regression for a Parametric Survival Model
survreg.control Package options for survreg and coxph
survreg.distributions Parametric Survival Distributions
survreg.object Parametric Survival Model Object
survregDtest Verify a survreg distribution
survSplit Split a survival data set at specified times

-- T --

t.Surv Methods for Surv objects
tail.Surv Methods for Surv objects
tcut Factors for person-year calculations
tmerge Time based merge for survival data
tobin Tobin's Tobit data
transplant Liver transplant waiting list

-- U --

udca Data from a trial of usrodeoxycholic acid
udca1 Data from a trial of usrodeoxycholic acid
udca2 Data from a trial of usrodeoxycholic acid
unique.Surv Methods for Surv objects
untangle.specials Help Process the 'specials' Argument of the 'terms' Function.
uspop2 Projected US Population

-- V --

vcov.coxph Variance-covariance matrix
vcov.survreg Variance-covariance matrix
veteran Veterans' Administration Lung Cancer study

-- X --

xtfrm.Surv Sorting order for Surv objects

-- Y --

yates Population prediction
yates_setup Method for adding new models to the 'yates' function.

-- misc --

[.cox.zph Test the Proportional Hazards Assumption of a Cox Regression
[.ratetable Rate table structure
[.Surv Create a Survival Object
[.survfit Compute a Survival Curve for Censored Data
[.tcut Factors for person-year calculations