Last updated on 2025-06-17 21:52:07 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| cfda | 13 | ||
| MLGL | 13 | ||
| Rankcluster | 4 | 9 | |
| Rmixmod | 12 | 1 | |
| RMixtComp | 1 | 1 | 11 |
| RMixtCompIO | 2 | 11 | |
| RMixtCompUtilities | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.0.0
Check: Rd files
Result: NOTE
checkRd: (-1) MLGL.Rd:43: Lost braces; missing escapes or markup?
43 | \item{y}{vector of size n. If loss = "logit", elements of y must be in {-1,1}}
| ^
checkRd: (-1) cv.MLGL.Rd:25: Lost braces; missing escapes or markup?
25 | \item{y}{vector of size n. If loss = "logit", elements of y must be in {-1,1}}
| ^
checkRd: (-1) overlapgglasso.Rd:26: Lost braces; missing escapes or markup?
26 | \item{y}{vector of size n. If loss = "logit", elements of y must be in {-1,1}}
| ^
checkRd: (-1) stability.MLGL.Rd:25: Lost braces; missing escapes or markup?
25 | \item{y}{vector of size n. If loss = "logit", elements of y must be in {-1,1}}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
MLGL.Rd: gglasso
cv.MLGL.Rd: cv.gglasso, predict.cv.gglasso
overlapgglasso.Rd: gglasso
stability.MLGL.Rd: gglasso
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 0.98.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Quentin Grimonprez <quentingrim@yahoo.fr>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.98.0
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
libs 4.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 12, OK: 1
Version: 2.1.10
Check: compiled code
Result: NOTE
File ‘Rmixmod/libs/Rmixmod.so’:
Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
Object: ‘mixmod.a’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.1.10
Check: compiled code
Result: NOTE
File ‘Rmixmod/libs/Rmixmod.so’:
Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
Object: ‘mixmod.a’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.10
Check: compiled code
Result: NOTE
File 'Rmixmod/libs/x64/Rmixmod.dll':
Found '_ZSt4cout', possibly from 'std::cout' (C++)
Object: 'mixmod.a'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 2.1.10
Check: compiled code
Result: NOTE
File ‘Rmixmod/libs/Rmixmod.so’:
Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
Object: ‘mixmod.a’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 2.1.10
Check: installed package size
Result: NOTE
installed size is 44.3Mb
sub-directories of 1Mb or more:
libs 43.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 4.1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
RMixtComp-package.Rd: createAlgo, availableModels,
RMixtCompUtilities-package, getBIC, getICL, getCompletedData,
getParam, getProportion, getTik, getEmpiricTik, getPartition,
getType, getModel, getVarNames, computeDiscrimPowerClass,
computeDiscrimPowerVar, computeSimilarityClass,
computeSimilarityVar, plot.MixtComp, heatmapClass,
heatmapTikSorted, heatmapVar, histMisclassif, plotConvergence,
plotDataBoxplot, plotDataCI, plotDiscrimClass, plotDiscrimVar,
plotProportion, RMixtCompIO-package
mixtCompLearn.Rd: createAlgo, availableModels, heatmapVar
plot.MixtCompLearn.Rd: plotDataCI, plotDataBoxplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 4.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ClusVis.Rmd’ using rmarkdown
Quitting from ClusVis.Rmd:33-36 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ClusVis'
---
Backtrace:
▆
1. └─base::library(ClusVis)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ClusVis.Rmd' failed with diagnostics:
there is no package called 'ClusVis'
--- failed re-building ‘ClusVis.Rmd’
--- re-building ‘MixtComp.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23840 bytes
Input file size = 23942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21808
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21808
Output IDAT size = 21808 bytes (2032 bytes decrease)
Output file size = 21886 bytes (2056 bytes = 8.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-8-2.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10051 bytes
Input file size = 10921 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8375
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8370
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8370
Output IDAT size = 8370 bytes (1681 bytes decrease)
Output file size = 8448 bytes (2473 bytes = 22.64% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-8-3.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 12256 bytes
Input file size = 13126 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10592
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10558
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10558
Output IDAT size = 10558 bytes (1698 bytes decrease)
Output file size = 10636 bytes (2490 bytes = 18.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-8-4.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31867 bytes
Input file size = 31981 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25836
Output IDAT size = 25836 bytes (6031 bytes decrease)
Output file size = 25914 bytes (6067 bytes = 18.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-8-5.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26758 bytes
Input file size = 26872 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23372
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23372
Output IDAT size = 23372 bytes (3386 bytes decrease)
Output file size = 23450 bytes (3422 bytes = 12.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-8-6.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34396 bytes
Input file size = 34522 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27284
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27284
Output IDAT size = 27284 bytes (7112 bytes decrease)
Output file size = 27362 bytes (7160 bytes = 20.74% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/RMixtComp.Rcheck/vign_test/RMixtComp/vignettes/MixtComp_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21518 bytes
Input file size = 21620 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18902
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18902
Output IDAT size = 18902 bytes (2616 bytes decrease)
Output file size = 18980 bytes (2640 bytes = 12.21% decrease)
--- finished re-building ‘MixtComp.Rmd’
--- re-building ‘dataFormat.Rmd’ using rmarkdown
--- finished re-building ‘dataFormat.Rmd’
--- re-building ‘mixtCompObject.Rmd’ using rmarkdown
--- finished re-building ‘mixtCompObject.Rmd’
SUMMARY: processing the following file failed:
‘ClusVis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 4.0.11
Check: installed package size
Result: NOTE
installed size is 30.5Mb
sub-directories of 1Mb or more:
libs 30.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 13
Version: 4.1.6
Check: Rd files
Result: NOTE
checkRd: (-1) histMisclassif.Rd:22: Lost braces
22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
| ^
checkRd: (-1) histMisclassif.Rd:22: Lost braces
22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64