Last updated on 2024-07-24 12:21:30 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| BayesBinMix | 10 | 3 | |
| bayesCureRateModel | 1 | 12 | |
| beast | 6 | 7 | |
| fabMix | 13 | ||
| factor.switching | 13 | ||
| label.switching | 13 | ||
| multinomialLogitMix | 13 | ||
| poisson.glm.mix | 13 |
Current CRAN status: NOTE: 10, OK: 3
Version: 1.4.1
Check: Rd files
Result: NOTE
checkRd: (-1) coupledMetropolis.Rd:83-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:86-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:92-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:95-97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:98-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:104-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:113-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:116-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:119-121: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:122-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:125-127: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0
Check: examples
Result: ERROR
Running examples in 'bayesCureRateModel-Ex.R' failed
The error most likely occurred in:
> ### Name: bayesCureRateModel-package
> ### Title: Bayesian Cure Rate Modeling for Time-to-Event Data
> ### Aliases: bayesCureRateModel-package bayesCureRateModel
> ### Keywords: package
>
> ### ** Examples
>
> # TOY EXAMPLE (very small numbers... only for CRAN check purposes)
> # simulate toy data
> set.seed(1)
> n = 4
> stat = rbinom(n, size = 1, prob = 0.5)
> x <- cbind(1, matrix(rnorm(n), n, 1))
> y <- rexp(n)
> # run a weibull model with default prior setup
> # considering 2 heated chains
> fit1 <- cure_rate_MC3(y = y, X = x, Censoring_status = stat,
+ promotion_time = list(distribution = 'weibull'),
+ nChains = 2,
+ nCores = 1,
+ mcmc_cycles = 3, sweep=2)
> # print method
> fit1
* Run information:
Fitted model: `weibull'
BIC: 72.813
MCMC cycles: 3
Number of parallel heated chains: 2
Swap rates of adjacent chains:
Min. Median Max.
1 1 1
* Maximum A Posteriori (MAP) estimate of parameters
MAP estimate
g_mcmc 2.3516764
lambda_mcmc 3.8770386
a1_mcmc 0.2955287
a2_mcmc 1.1932600
b0_mcmc [] -0.3071637
b1_mcmc [] 2.7175316
> # summary method
> summary1 <- summary(fit1)
By default, I will discard the first one third of the mcmc sample as burn-in period.
Alternatively, you may set the "burn" parameter to another value.
Error in mvnX(data = data, prior = prior) :
NA/NaN/Inf in foreign function call (arg 1)
Calls: summary ... eval -> eval -> mclustBIC -> mvn -> eval -> eval -> mvnX
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 6, OK: 7
Version: 1.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘beast_plot_toy.pdf’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13