[R-sig-ME] Paired ttest using lme4

[Jarrod Hadfield]

Hi Ghader,

a) tt is not set up in the correct way for a pair t-test.
b) the mixed model assumes the variances are equal, but the call to t.test specifies them to be different.

t.test(tt2[1:3,3], tt2[4:6,3], var.equal=TRUE)

is identical to lmer.

Cheers,

Jarrod



On 17 Jun 2024, at 16:01, Ghader Mirzaghaderi via R-sig-mixed-models <r-sig-mixed-models using r-project.org> wrote:

var.equal = F

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