[R-sig-ME] glmmTMB, OpenMP and Ubuntu

meg@-x m@iii@g oii gmx@@et meg@-x m@iii@g oii gmx@@et
Mon Sep 7 11:56:25 CEST 2020

Dear all,

I am currently fitting a complex model with glmmTMB that involves random
effects and covariance structures (spatiotemporal autocorrelation). I would
like to try the experimental parallel optimization feature
to reduce computation time. To do this I've setup a virtual machine running
Ubuntu 20.04 on 16+ cores. However, I found no information in how to setup
OpenMP, R and glmmTMB. Is there a step by step guide that I can follow?

The Vignette states the following:

"If your OS supports OpenMP parallelization and R was installed using
OpenMP, glmmTMB will automatically pick up the OpenMP flags from R's
Makevars and compile the C++ model with OpenMP support."

I was not able to find any information on how to install R using OpenMP.



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