[R-sig-ME] profile and/or bootstrapped CIs for GAMM random effects
John Morrongiello
jrmorrongiello at gmail.com
Wed Aug 26 15:23:18 CEST 2015
Hi
I'm having trouble estimating CIs for random effects (i.e. CODE) from a
gamm4 model fit with a gamma distribution,
My model is:
c1<-gamm4((longdist)~s(time,k=4),random=~(1|CODE),data=catfish1,family=Gamma(link=log))
confint(c1$mer,method="profile")
##this returns
Error in mkMerMod(rho = environment(devfun), opt = opt, reTrms = b$reTrms,
:
unused argument (devFunOnly = TRUE)
confint(c1$mer,method="boot")
##this returns
Error in mkNewReTrms(object, newdata, compReForm, na.action = na.action, :
random effects specified in re.form that were not present in original
model
Are these errors arising because I'm using a gamma distribution? Is there
another way to get the random effect CIs?
I can get random effect CIs for the following model:
c2<-gamm4((longdist)~s(time,k=4),random=~(1|CODE),data=catfish1,family=gaussian)
confint(c2$mer,method="profile")##works
confint(c2$mer,method="boot")##same error message as above
Thanks for your time
John
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