[R-sig-ME] lme4 0.999375-20 installation error

[Douglas Bates]

I'm not sure exactly what is happening on the Suse system but there
should be an additional -I clause in the call to gcc.  When I compile
on a Red Hat system the transcript includes

gcc -I/unsup/R-2.7.0/lib/R/include  -I/usr/local/include
-I"/u/b/a/bates/R/i686-pc-linux-gnu-library/2.7/Matrix/include"
-fpic  -Wall -pedantic -g -O3 -std=gnu99 -c init.c -o init.o

It is the last -I clause that provides the location to find Matrix.h,
which is what you are missing here.

On Wed, Jul 9, 2008 at 4:24 PM, Mark Lyman <mark.lyman at atk.com> wrote:
> I am attempting to install lme4 0.999375-20 on a SUSE 9.1 machine. I have
> already installed Matrix 0.999375-10. However, the lme4 install fails. Do you
> have any suggestions on what might be wrong? My output follows:
>
> * Installing *source* package 'lme4' ...
> ** libs
> gcc -std=gnu99 -I/apps/R/R270/lib64/R/include  -I/usr/local/include    -fpic  -
> g -O2 -c init.c -o init.o
> init.c:3:20: Matrix.h: No such file or directory
> In file included from init.c:4:
> Syms.h:3: error: parse error before "lme4_ASym"
> Syms.h:3: warning: type defaults to `int' in declaration of `lme4_ASym'
> Syms.h:4: warning: type defaults to `int' in declaration of `lme4_CmSym'
> Syms.h:5: warning: type defaults to `int' in declaration of `lme4_CxSym'
> Syms.h:6: warning: type defaults to `int' in declaration of `lme4_DimSym'
> Syms.h:7: warning: type defaults to `int' in declaration of `lme4_GpSym'
> Syms.h:8: warning: type defaults to `int' in declaration of `lme4_LSym'
> Syms.h:9: warning: type defaults to `int' in declaration of `lme4_RXSym'
> Syms.h:10: warning: type defaults to `int' in declaration of `lme4_RZXSym'
> Syms.h:11: warning: type defaults to `int' in declaration of `lme4_STSym'
> Syms.h:12: warning: type defaults to `int' in declaration of `lme4_VSym'
> Syms.h:13: warning: type defaults to `int' in declaration of `lme4_XSym'
> Syms.h:14: warning: type defaults to `int' in declaration of `lme4_ZtSym'
> Syms.h:15: warning: type defaults to `int' in declaration of `lme4_devianceSym'
> Syms.h:16: warning: type defaults to `int' in declaration of `lme4_dimsSym'
> Syms.h:17: warning: type defaults to `int' in declaration of `lme4_envSym'
> Syms.h:18: warning: type defaults to `int' in declaration of `lme4_etaSym'
> Syms.h:19: warning: type defaults to `int' in declaration of `lme4_fixefSym'
> Syms.h:20: warning: type defaults to `int' in declaration of `lme4_flistSym'
> Syms.h:21: warning: type defaults to `int' in declaration of `lme4_gradientSym'
> Syms.h:22: warning: type defaults to `int' in declaration of `lme4_iSym'
> Syms.h:23: warning: type defaults to `int' in declaration of `lme4_muEtaSym'
> Syms.h:24: warning: type defaults to `int' in declaration of `lme4_muSym'
> Syms.h:25: warning: type defaults to `int' in declaration of `lme4_ncSym'
> Syms.h:26: warning: type defaults to `int' in declaration of `lme4_nlmodelSym'
> Syms.h:27: warning: type defaults to `int' in declaration of `lme4_offsetSym'
> Syms.h:28: warning: type defaults to `int' in declaration of `lme4_pSym'
> Syms.h:29: warning: type defaults to `int' in declaration of `lme4_pWtSym'
> Syms.h:30: warning: type defaults to `int' in declaration of `lme4_permSym'
> Syms.h:31: warning: type defaults to `int' in declaration of `lme4_ranefSym'
> Syms.h:32: warning: type defaults to `int' in declaration of `lme4_residSym'
> Syms.h:33: warning: type defaults to `int' in declaration of `lme4_sigmaSym'
> Syms.h:34: warning: type defaults to `int' in declaration of `lme4_sqrtXWtSym'
> Syms.h:35: warning: type defaults to `int' in declaration of `lme4_sqrtrWtSym'
> Syms.h:36: warning: type defaults to `int' in declaration of `lme4_uSym'
> Syms.h:37: warning: type defaults to `int' in declaration of `lme4_varSym'
> Syms.h:38: warning: type defaults to `int' in declaration of `lme4_xSym'
> Syms.h:39: warning: type defaults to `int' in declaration of `lme4_ySym'
> Syms.h:39: warning: data definition has no type or storage class
> init.c:37: error: parse error before "c"
> init.c:37: warning: type defaults to `int' in declaration of `c'
> init.c:37: warning: data definition has no type or storage class
> init.c: In function `R_init_lme4':
> init.c:54: warning: implicit declaration of function `M_R_cholmod_start'
> init.c:55: error: request for member `final_ll' in something not a structure or
> union
> init.c:57: warning: assignment makes integer from pointer without a cast
> init.c:58: warning: assignment makes integer from pointer without a cast
> init.c:59: warning: assignment makes integer from pointer without a cast
> init.c:60: warning: assignment makes integer from pointer without a cast
> init.c:61: warning: assignment makes integer from pointer without a cast
> init.c:62: warning: assignment makes integer from pointer without a cast
> init.c:63: warning: assignment makes integer from pointer without a cast
> init.c:64: warning: assignment makes integer from pointer without a cast
> init.c:65: warning: assignment makes integer from pointer without a cast
> init.c:66: warning: assignment makes integer from pointer without a cast
> init.c:67: warning: assignment makes integer from pointer without a cast
> init.c:68: warning: assignment makes integer from pointer without a cast
> init.c:69: warning: assignment makes integer from pointer without a cast
> init.c:70: warning: assignment makes integer from pointer without a cast
> init.c:71: warning: assignment makes integer from pointer without a cast
> init.c:72: warning: assignment makes integer from pointer without a cast
> init.c:73: warning: assignment makes integer from pointer without a cast
> init.c:74: warning: assignment makes integer from pointer without a cast
> init.c:75: warning: assignment makes integer from pointer without a cast
> init.c:76: warning: assignment makes integer from pointer without a cast
> init.c:77: warning: assignment makes integer from pointer without a cast
> init.c:78: warning: assignment makes integer from pointer without a cast
> init.c:79: warning: assignment makes integer from pointer without a cast
> init.c:80: warning: assignment makes integer from pointer without a cast
> init.c:81: warning: assignment makes integer from pointer without a cast
> init.c:82: warning: assignment makes integer from pointer without a cast
> init.c:83: warning: assignment makes integer from pointer without a cast
> init.c:84: warning: assignment makes integer from pointer without a cast
> init.c:85: warning: assignment makes integer from pointer without a cast
> init.c:86: warning: assignment makes integer from pointer without a cast
> init.c:87: warning: assignment makes integer from pointer without a cast
> init.c:88: warning: assignment makes integer from pointer without a cast
> init.c:89: warning: assignment makes integer from pointer without a cast
> init.c:90: warning: assignment makes integer from pointer without a cast
> init.c:91: warning: assignment makes integer from pointer without a cast
> init.c:92: warning: assignment makes integer from pointer without a cast
> init.c:93: warning: assignment makes integer from pointer without a cast
> init.c: In function `R_unload_lme4':
> init.c:100: warning: implicit declaration of function `M_cholmod_finish'
> make: *** [init.o] Error 1
> ERROR: compilation failed for package 'lme4'
>
> Mark Lyman, Statistician
> ATK Launch Systems
>
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