[R-sig-ME] lme4 0.999375-20 installation error

Mark Lyman mark.lyman at atk.com
Wed Jul 9 23:24:30 CEST 2008


I am attempting to install lme4 0.999375-20 on a SUSE 9.1 machine. I have 
already installed Matrix 0.999375-10. However, the lme4 install fails. Do you 
have any suggestions on what might be wrong? My output follows:

* Installing *source* package 'lme4' ...
** libs
gcc -std=gnu99 -I/apps/R/R270/lib64/R/include  -I/usr/local/include    -fpic  -
g -O2 -c init.c -o init.o
init.c:3:20: Matrix.h: No such file or directory
In file included from init.c:4:
Syms.h:3: error: parse error before "lme4_ASym"
Syms.h:3: warning: type defaults to `int' in declaration of `lme4_ASym'
Syms.h:4: warning: type defaults to `int' in declaration of `lme4_CmSym'
Syms.h:5: warning: type defaults to `int' in declaration of `lme4_CxSym'
Syms.h:6: warning: type defaults to `int' in declaration of `lme4_DimSym'
Syms.h:7: warning: type defaults to `int' in declaration of `lme4_GpSym'
Syms.h:8: warning: type defaults to `int' in declaration of `lme4_LSym'
Syms.h:9: warning: type defaults to `int' in declaration of `lme4_RXSym'
Syms.h:10: warning: type defaults to `int' in declaration of `lme4_RZXSym'
Syms.h:11: warning: type defaults to `int' in declaration of `lme4_STSym'
Syms.h:12: warning: type defaults to `int' in declaration of `lme4_VSym'
Syms.h:13: warning: type defaults to `int' in declaration of `lme4_XSym'
Syms.h:14: warning: type defaults to `int' in declaration of `lme4_ZtSym'
Syms.h:15: warning: type defaults to `int' in declaration of `lme4_devianceSym'
Syms.h:16: warning: type defaults to `int' in declaration of `lme4_dimsSym'
Syms.h:17: warning: type defaults to `int' in declaration of `lme4_envSym'
Syms.h:18: warning: type defaults to `int' in declaration of `lme4_etaSym'
Syms.h:19: warning: type defaults to `int' in declaration of `lme4_fixefSym'
Syms.h:20: warning: type defaults to `int' in declaration of `lme4_flistSym'
Syms.h:21: warning: type defaults to `int' in declaration of `lme4_gradientSym'
Syms.h:22: warning: type defaults to `int' in declaration of `lme4_iSym'
Syms.h:23: warning: type defaults to `int' in declaration of `lme4_muEtaSym'
Syms.h:24: warning: type defaults to `int' in declaration of `lme4_muSym'
Syms.h:25: warning: type defaults to `int' in declaration of `lme4_ncSym'
Syms.h:26: warning: type defaults to `int' in declaration of `lme4_nlmodelSym'
Syms.h:27: warning: type defaults to `int' in declaration of `lme4_offsetSym'
Syms.h:28: warning: type defaults to `int' in declaration of `lme4_pSym'
Syms.h:29: warning: type defaults to `int' in declaration of `lme4_pWtSym'
Syms.h:30: warning: type defaults to `int' in declaration of `lme4_permSym'
Syms.h:31: warning: type defaults to `int' in declaration of `lme4_ranefSym'
Syms.h:32: warning: type defaults to `int' in declaration of `lme4_residSym'
Syms.h:33: warning: type defaults to `int' in declaration of `lme4_sigmaSym'
Syms.h:34: warning: type defaults to `int' in declaration of `lme4_sqrtXWtSym'
Syms.h:35: warning: type defaults to `int' in declaration of `lme4_sqrtrWtSym'
Syms.h:36: warning: type defaults to `int' in declaration of `lme4_uSym'
Syms.h:37: warning: type defaults to `int' in declaration of `lme4_varSym'
Syms.h:38: warning: type defaults to `int' in declaration of `lme4_xSym'
Syms.h:39: warning: type defaults to `int' in declaration of `lme4_ySym'
Syms.h:39: warning: data definition has no type or storage class
init.c:37: error: parse error before "c"
init.c:37: warning: type defaults to `int' in declaration of `c'
init.c:37: warning: data definition has no type or storage class
init.c: In function `R_init_lme4':
init.c:54: warning: implicit declaration of function `M_R_cholmod_start'
init.c:55: error: request for member `final_ll' in something not a structure or 
union
init.c:57: warning: assignment makes integer from pointer without a cast
init.c:58: warning: assignment makes integer from pointer without a cast
init.c:59: warning: assignment makes integer from pointer without a cast
init.c:60: warning: assignment makes integer from pointer without a cast
init.c:61: warning: assignment makes integer from pointer without a cast
init.c:62: warning: assignment makes integer from pointer without a cast
init.c:63: warning: assignment makes integer from pointer without a cast
init.c:64: warning: assignment makes integer from pointer without a cast
init.c:65: warning: assignment makes integer from pointer without a cast
init.c:66: warning: assignment makes integer from pointer without a cast
init.c:67: warning: assignment makes integer from pointer without a cast
init.c:68: warning: assignment makes integer from pointer without a cast
init.c:69: warning: assignment makes integer from pointer without a cast
init.c:70: warning: assignment makes integer from pointer without a cast
init.c:71: warning: assignment makes integer from pointer without a cast
init.c:72: warning: assignment makes integer from pointer without a cast
init.c:73: warning: assignment makes integer from pointer without a cast
init.c:74: warning: assignment makes integer from pointer without a cast
init.c:75: warning: assignment makes integer from pointer without a cast
init.c:76: warning: assignment makes integer from pointer without a cast
init.c:77: warning: assignment makes integer from pointer without a cast
init.c:78: warning: assignment makes integer from pointer without a cast
init.c:79: warning: assignment makes integer from pointer without a cast
init.c:80: warning: assignment makes integer from pointer without a cast
init.c:81: warning: assignment makes integer from pointer without a cast
init.c:82: warning: assignment makes integer from pointer without a cast
init.c:83: warning: assignment makes integer from pointer without a cast
init.c:84: warning: assignment makes integer from pointer without a cast
init.c:85: warning: assignment makes integer from pointer without a cast
init.c:86: warning: assignment makes integer from pointer without a cast
init.c:87: warning: assignment makes integer from pointer without a cast
init.c:88: warning: assignment makes integer from pointer without a cast
init.c:89: warning: assignment makes integer from pointer without a cast
init.c:90: warning: assignment makes integer from pointer without a cast
init.c:91: warning: assignment makes integer from pointer without a cast
init.c:92: warning: assignment makes integer from pointer without a cast
init.c:93: warning: assignment makes integer from pointer without a cast
init.c: In function `R_unload_lme4':
init.c:100: warning: implicit declaration of function `M_cholmod_finish'
make: *** [init.o] Error 1
ERROR: compilation failed for package 'lme4'

Mark Lyman, Statistician
ATK Launch Systems




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