[R-sig-ME] lme4 MS binary on R-Forge
Renaud.lancelot
Renaud.lancelot at cirad.fr
Mon May 5 14:20:40 CEST 2008
Martin Maechler a écrit :
>>>>>> "Rl" == Renaud lancelot <Renaud.lancelot at cirad.fr>
>>>>>> on Sun, 04 May 2008 18:37:41 +0200 writes:
>
> Rl> Thank you very much !
> Rl> Now I have the following warnings. Is this a "synchronization" issue
> Rl> with Matrix ?
>
> Rl> Best,
>
> Rl> Renaud
>
> >> library(lme4)
> Rl> Le chargement a nécessité le package : Matrix
> Rl> Le chargement a nécessité le package : lattice
>
> Rl> Attachement du package : 'Matrix'
>
>
> Rl> The following object(s) are masked from package:stats :
>
> Rl> xtabs
>
> That warning is currently unavoidable.
> We intentionally have masked stats::xtabs()
> because Matrix::xtabs() is functionally a super-set of the stats
> version: The 'Matrix' one allows sparse contingency tables.
>
> I hope that by R 2.8.0, "Matrix" will be recommended and we'll
> have found a clean way to avoid the warning.
>
>
> Rl> The following object(s) are masked from package:base :
>
> Rl> rcond
>
> This is a "funny".
> I don't see it in R 2.7.0 nor in a more recent version of
> R-patched than yours.
> You should either upgrade your R-patched or use R 2.7.0.
> Can you confirm, that then, the second warning will be gone ?
It is still here with the latest version of R-patched:
> library(lme4)
Le chargement a nécessité le package : Matrix
Le chargement a nécessité le package : lattice
Attachement du package : 'Matrix'
The following object(s) are masked from package:stats :
xtabs
The following object(s) are masked from package:base :
rcond
Warning messages:
1: In .recacheSubclasses(def at className, def, doSubclasses) :
Undefined subclass, "double", of class "atomicVector"; definition not
updated
2: In .recacheSubclasses(def at className, def, doSubclasses) :
Undefined subclass, "double", of class "index"; definition not updated
3: In .recacheSubclasses(def at className, def, doSubclasses) :
Undefined subclass, "double", of class "number"; definition not updated
4: In .recacheSubclasses(def at className, def, doSubclasses) :
Undefined subclass, "double", of class "replValue"; definition not
updated
> sessionInfo()
R version 2.7.0 Patched (2008-05-03 r45596)
i386-pc-mingw32
locale:
LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lme4_0.999375-14 Matrix_0.999375-9 lattice_0.17-7 fortunes_1.3-4
loaded via a namespace (and not attached):
[1] grid_2.7.0
Thank you for your help,
Best regards,
Renaud
>
>
> Martin
>
> Rl> Warning messages:
> Rl> 1: In .recacheSubclasses(def at className, def, doSubclasses) :
> Rl> Undefined subclass, "double", of class "atomicVector"; definition not
> Rl> updated
> Rl> 2: In .recacheSubclasses(def at className, def, doSubclasses) :
> Rl> Undefined subclass, "double", of class "index"; definition not updated
> Rl> 3: In .recacheSubclasses(def at className, def, doSubclasses) :
> Rl> Undefined subclass, "double", of class "number"; definition not updated
> Rl> 4: In .recacheSubclasses(def at className, def, doSubclasses) :
> Rl> Undefined subclass, "double", of class "replValue"; definition not
> Rl> updated
>
> >> sessionInfo()
> Rl> R version 2.7.0 Patched (2008-04-23 r45466)
> Rl> i386-pc-mingw32
>
> Rl> locale:
> Rl> LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252
>
> Rl> attached base packages:
> Rl> [1] stats graphics grDevices utils datasets methods base
>
> Rl> other attached packages:
> Rl> [1] lme4_0.999375-14 Matrix_0.999375-9 lattice_0.17-7 fortunes_1.3-4
>
> Rl> loaded via a namespace (and not attached):
> Rl> [1] grid_2.7.0 tools_2.7.0
> >>
>
>
>
>
> Rl> Douglas Bates a écrit :
> >> In looking at some log files over the last few weeks I think it is
> >> because of the configuration of the Windows compilation system for
> >> R-forge.
> >>
> >> Mind you,, I'm not complaining. I consider trying to develop code on
> >> Windows to be the sort of activity I would only agree to if members of
> >> my family were being held hostage so I am very happy when someone else
> >> does the Windows compilation for me.
> >>
> >> I have just uploaded the source package to Uwe's site
> >> http://win-builder.r-project.org/ Assuming that it builds properly I
> >> will make the Windows binary package of the development version of the
> >> lme4 package available as
> >> http://www.stat.wisc.edu/~bates/lme4_0.999375-14.zip
> >>
> >>
> >> On Sat, May 3, 2008 at 5:34 PM, Renaud.lancelot
> >> <Renaud.lancelot at cirad.fr> wrote:
> >>> Dear all,
> >>>
> >>> There is a problem on R-Forge to get the Windows binary of lme4:
> >>>
> >>>> install.packages("lme4", lib="C:/R/RLIBS", repos =
> >>>> "http://R-Forge.R-project.org")
> >>> Warning message:
> >>> package 'lme4' is not available
> >>>
> >>> I was able to download the sources.
> >>>
> >>> Best,
> >>>
> >>> Renaud
> >>>
> >>>
> >>>> sessionInfo()
> >>> R version 2.7.0 Patched (2008-04-23 r45466)
> >>> i386-pc-mingw32
> >>>
> >>> locale:
> >>> LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252
> >>>
> >>> attached base packages:
> >>> [1] stats graphics grDevices utils datasets methods base
> >>>
> >>> other attached packages:
> >>> [1] fortunes_1.3-4
> >>>
> >>> loaded via a namespace (and not attached):
> >>> [1] tools_2.7.0
> >>>
> >>>
> >>> --
> >>> Renaud Lancelot
> >>> EDEN Project, coordinator
> >>> http://www.eden-fp6project.net/
> >>>
> >>> CIRAD, BIOS Department
> >>> Campus International de Baillarguet TA A-DIR / B
> >>> F34398 Montpellier
> >>> http://www.cirad.fr
> >>>
> >>> Tel. +33 4 67 59 37 17 - Fax +33 4 67 59 37 95
> >>> Secr. +33 4 67 59 37 37 - Cell. +33 6 77 52 08 69
> >>>
>
> Rl> --
> Rl> Renaud Lancelot
> Rl> EDEN Project, coordinator
> Rl> http://www.eden-fp6project.net/
>
> Rl> CIRAD, BIOS Department
> Rl> Campus International de Baillarguet TA A-DIR / B
> Rl> F34398 Montpellier
> Rl> http://www.cirad.fr
>
> Rl> Tel. +33 4 67 59 37 17 - Fax +33 4 67 59 37 95
> Rl> Secr. +33 4 67 59 37 37 - Cell. +33 6 77 52 08 69
>
> Rl> _______________________________________________
> Rl> R-sig-mixed-models at r-project.org mailing list
> Rl> https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
>
--
Renaud Lancelot
EDEN Project, coordinator
http://www.eden-fp6project.net/
CIRAD, BIOS Department
Campus International de Baillarguet TA A-DIR / B
F34398 Montpellier
http://www.cirad.fr
Tel. +33 4 67 59 37 17 - Fax +33 4 67 59 37 95
Secr. +33 4 67 59 37 37 - Cell. +33 6 77 52 08 69
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