[R-sig-ME] lme4 MS binary on R-Forge

[Martin Maechler]

>>>>> "Rl" == Renaud lancelot <Renaud.lancelot at cirad.fr>
>>>>>     on Sun, 04 May 2008 18:37:41 +0200 writes:

    Rl> Thank you very much !
    Rl> Now I have the following warnings. Is this a "synchronization" issue 
    Rl> with Matrix ?

    Rl> Best,

    Rl> Renaud

    >> library(lme4)
    Rl> Le chargement a nécessité le package : Matrix
    Rl> Le chargement a nécessité le package : lattice

    Rl> Attachement du package : 'Matrix'


    Rl> The following object(s) are masked from package:stats :

    Rl>    xtabs

That warning is currently unavoidable.
We intentionally have masked stats::xtabs() 
because Matrix::xtabs() is functionally a super-set of the stats
version:  The 'Matrix' one allows sparse contingency tables.

I hope that by R 2.8.0, "Matrix" will be recommended and we'll
have found a clean way to avoid the warning.


    Rl> The following object(s) are masked from package:base :

    Rl> rcond

This is a "funny". 
I don't see it in R 2.7.0 nor in a more recent version of
R-patched than yours.  
You should either upgrade your R-patched or use R 2.7.0.
Can you confirm, that then, the second warning will be gone ?

Martin

    Rl> Warning messages:
    Rl> 1: In .recacheSubclasses(def at className, def, doSubclasses) :
    Rl> Undefined subclass, "double", of class "atomicVector"; definition not 
    Rl> updated
    Rl> 2: In .recacheSubclasses(def at className, def, doSubclasses) :
    Rl> Undefined subclass, "double", of class "index"; definition not updated
    Rl> 3: In .recacheSubclasses(def at className, def, doSubclasses) :
    Rl> Undefined subclass, "double", of class "number"; definition not updated
    Rl> 4: In .recacheSubclasses(def at className, def, doSubclasses) :
    Rl> Undefined subclass, "double", of class "replValue"; definition not 
    Rl> updated

    >> sessionInfo()
    Rl> R version 2.7.0 Patched (2008-04-23 r45466)
    Rl> i386-pc-mingw32

    Rl> locale:
    Rl> LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252

    Rl> attached base packages:
    Rl> [1] stats     graphics  grDevices utils     datasets  methods   base

    Rl> other attached packages:
    Rl> [1] lme4_0.999375-14  Matrix_0.999375-9 lattice_0.17-7    fortunes_1.3-4

    Rl> loaded via a namespace (and not attached):
    Rl> [1] grid_2.7.0  tools_2.7.0
    >> 




    Rl> Douglas Bates a écrit :
    >> In looking at some log files over the last few weeks I think it is
    >> because of the configuration of the Windows compilation system for
    >> R-forge.
    >> 
    >> Mind you,, I'm not complaining.  I consider trying to develop code on
    >> Windows to be the sort of activity I would only agree to if members of
    >> my family were being held hostage so I am very happy when someone else
    >> does the Windows compilation for me.
    >> 
    >> I have just uploaded the source package to Uwe's site
    >> http://win-builder.r-project.org/  Assuming that it builds properly I
    >> will make the Windows binary package of the development version of the
    >> lme4 package available as
    >> http://www.stat.wisc.edu/~bates/lme4_0.999375-14.zip
    >> 
    >> 
    >> On Sat, May 3, 2008 at 5:34 PM, Renaud.lancelot
    >> <Renaud.lancelot at cirad.fr> wrote:
    >>> Dear all,
    >>> 
    >>> There is a problem on R-Forge to get the Windows binary of lme4:
    >>> 
    >>>> install.packages("lme4", lib="C:/R/RLIBS", repos =
    >>>> "http://R-Forge.R-project.org")
    >>> Warning message:
    >>> package 'lme4' is not available
    >>> 
    >>> I was able to download the sources.
    >>> 
    >>> Best,
    >>> 
    >>> Renaud
    >>> 
    >>> 
    >>>> sessionInfo()
    >>> R version 2.7.0 Patched (2008-04-23 r45466)
    >>> i386-pc-mingw32
    >>> 
    >>> locale:
    >>> LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252
    >>> 
    >>> attached base packages:
    >>> [1] stats     graphics  grDevices utils     datasets  methods   base
    >>> 
    >>> other attached packages:
    >>> [1] fortunes_1.3-4
    >>> 
    >>> loaded via a namespace (and not attached):
    >>> [1] tools_2.7.0
    >>> 
    >>> 
    >>> --
    >>> Renaud Lancelot
    >>> EDEN Project, coordinator
    >>> http://www.eden-fp6project.net/
    >>> 
    >>> CIRAD, BIOS Department
    >>> Campus International de Baillarguet TA A-DIR / B
    >>> F34398 Montpellier
    >>> http://www.cirad.fr
    >>> 
    >>> Tel.  +33 4 67 59 37 17  -  Fax  +33 4 67 59 37 95
    >>> Secr. +33 4 67 59 37 37  - Cell. +33 6 77 52 08 69
    >>> 

    Rl> -- 
    Rl> Renaud Lancelot
    Rl> EDEN Project, coordinator
    Rl> http://www.eden-fp6project.net/

    Rl> CIRAD, BIOS Department
    Rl> Campus International de Baillarguet TA A-DIR / B
    Rl> F34398 Montpellier
    Rl> http://www.cirad.fr

    Rl> Tel.  +33 4 67 59 37 17  -  Fax  +33 4 67 59 37 95
    Rl> Secr. +33 4 67 59 37 37  - Cell. +33 6 77 52 08 69

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