[R-meta] rma.mv to lme possible?
Timothy MacKenzie
|@w|@wt @end|ng |rom gm@||@com
Fri Nov 26 02:57:05 CET 2021
Dear All,
I've specified the following rma.mv() model for my meta-analysis.
However, I'm wondering how to replicate this model using lme() from
the nlme package (sample data is provided below)?
V <- with(dat1, clubSandwich::impute_covariance_matrix(vi,study,r=.6))
g<-rma.mv(yi ~ 0 + study_type, V, random = list(~study_type | study,
~interaction(study_type,reporting) | obs), struct = c("DIAG","DIAG"),
data = dat1)
I'm open to either ML or REML methods of estimation. I have tried the
following with no success:
lme(yi ~ 0 + study_type,
random = list(~study_type | study,
~interaction(study_type,reporting) | obs),
weights = varComb(varFixed(~vi),
varIdent(form = ~study | study_type),
varIdent(form = ~obs |
interaction(study_type,reporting))),
correlation = corCompSymm(.6, ~1|study, fixed = TRUE),
data = dat1,
control=lmeControl(sigma = 1,returnObject=TRUE))
Thanks,
Tim M
d="
study subscale reporting obs include yi vi study_type
1 A subscale 1 yes 1.94 0.33503768 standard
1 A subscale 2 yes 1.06 0.01076604 standard
2 A subscale 3 yes 2.41 0.23767389 standard
2 A subscale 4 yes 2.34 0.37539841 standard
3 A&C composite 5 yes 3.09 0.31349510 standard
3 A&C composite 6 yes 3.99 0.01349510 standard
4 A&B composite 7 yes 2.90 0.31349510 standard
4 A&B composite 8 yes 3.01 0.91349510 standard
5 G&H composite 9 yes 2.01 0.97910095 alternative
5 G&H composite 10 yes 2.11 0.37910095 alternative
6 E&G composite 11 yes 2.01 0.67910095 alternative
6 E&G composite 12 yes 2.11 0.87910095 alternative
7 E subscale 13 yes 0.08 0.21670360 alternative
7 G subscale 14 yes 0.77 0.91297170 alternative
8 F subscale 15 yes 1.08 0.81670360 alternative
8 E subscale 16 yes 1.07 0.91297170 alternative"
dat1 <- read.table(text=d,h=T)
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