[R-meta] Putting pooled effects from different multilevel meta analyses into the same forest plot

[Dylan Johnson]

Apologies for not CC�ing the mailing list.



As a last question, is there a way for me to make each of these polygons a different colour as opposed to all the same:



forest(c(coef(m.overall), coef(m.overall2), coef(m.overall3)),

       c(vcov(m.overall), vcov(m.overall2), round(vcov(m.overall3), digits = 3)),

       slab=c("Threat (k=23)", "Deprivation (k=14)", "Composite (k=77)"),

       header=c("Cognitive Flexibility", "Hedge's g [95% CI]"), xlab="Hedge's g",

       top=2, refline=NA, xlim=c(-3,1), at=log(c(.2, .5, 1)), psize=1, efac=0)



addpoly(c(coef(m.overall), coef(m.overall2), coef(m.overall3)),

        c(vcov(m.overall), vcov(m.overall2), vcov(m.overall3)),

        rows=3:1, efac=2, annotate=FALSE, col = 2)







Dylan Johnson, MSc

MA Student, School and Clinical Child Psychology
Department of Applied Psychology and Human Development

University of Toronto
252 Bloor Street West

Toronto, ON M5S 1V6



From: Viechtbauer, Wolfgang (SP)<mailto:wolfgang.viechtbauer using maastrichtuniversity.nl>
Sent: December 20, 2020 3:26 PM
To: Dylan Johnson<mailto:dylanr.johnson using mail.utoronto.ca>
Cc: R meta<mailto:r-sig-meta-analysis using r-project.org>
Subject: RE: Putting pooled effects from different multilevel meta analyses into the same forest plot



EXTERNAL EMAIL:

Please always cc the mailing list when replying.

You could use addpoly() to draw the polygons on top. Continuing with the example:

addpoly(c(coef(res.r), coef(res.n), coef(res)),
        c(vcov(res.r), vcov(res.n), vcov(res)),
        rows=3:1, efac=2, annotate=FALSE)

Best,
Wolfgang

>-----Original Message-----
>From: Dylan Johnson [mailto:dylanr.johnson using mail.utoronto.ca]
>Sent: Sunday, 20 December, 2020 20:38
>To: Viechtbauer, Wolfgang (SP)
>Subject: RE: Putting pooled effects from different multilevel meta analyses
>into the same forest plot
>
>Thanks for the script, I managed to get it working!
>
>Do you know if there is any way to get them to show up with the diamond
>shape plotted instead of the squares? They are technically pooled effects so
>I think it would hammer that home better.
>
>Thanks!
>
>Dylan
>
>Dylan Johnson, MSc
>MA Student, School and Clinical Child Psychology
>Department of Applied Psychology and Human Development
>University of Toronto
>252 Bloor Street West
>Toronto, ON M5S 1V6
>
>From: Viechtbauer, Wolfgang (SP)
>Sent: December 20, 2020 6:59 AM
>To: Dylan Johnson; r-sig-meta-analysis using r-project.org
>Subject: RE: Putting pooled effects from different multilevel meta analyses
>into the same forest plot
>
>Hi Dylan,
>
>Here is an example using rma(), but the same principle applies to models
>fitted with rma.mv().
>
>dat <- dat.bcg
>dat <- escalc(measure="RR", ai=tpos, bi=tneg, ci=cpos, di=cneg, data=dat)
>res   <- rma(yi, vi, data=dat)
>res.r <- rma(yi, vi, data=dat, subset=alloc=="random")
>res.n <- rma(yi, vi, data=dat, subset=alloc!="random")
>
>dev.new(width=10, height=6)
>forest(c(coef(res.r), coef(res.n), coef(res)),
>       c(vcov(res.r), vcov(res.n), vcov(res)),
>       slab=c("With Random Assignment", "Without Random Assignment", "All
>Studies"),
>       header=c("Subset", "Risk Ratio [95% CI]"), xlab="Risk Ratio (log
>scale)",
>       top=2, refline=NA, xlim=c(-3,1), atransf=exp, at=log(c(.2, .5, 1)),
>psize=1, efac=0)
>
>Best,
>Wolfgang
>
>>-----Original Message-----
>>From: R-sig-meta-analysis [mailto:r-sig-meta-analysis-bounces using r-
>project.org]
>>On Behalf Of Dylan Johnson
>>Sent: Sunday, 20 December, 2020 2:01
>>To: r-sig-meta-analysis using r-project.org
>>Subject: [R-meta] Putting pooled effects from different multilevel meta
>>analyses into the same forest plot
>>
>>Hello,
>>
>>I am currently using the rma.mv function to carry out my metas and would
>>like to display two pooled subgroups from one of them and an additional
>>pooled estimate from another.
>>
>>Is there anyways to go about doing this?
>>
>>Many thanks!
>>
>>Dylan
>>
>>Dylan Johnson, MSc
>>
>>MA Student, School and Clinical Child Psychology
>>Department of Applied Psychology and Human Development
>>
>>University of Toronto
>>252 Bloor Street West
>>
>>Toronto, ON M5S 1V6

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