[R-SIG-Mac] upgraded to 4.5 (mac x86), errors

[Carl Witthoft]

I did this sequence: copy over all 4.4 packages and then selected 
"update all" from the R-gui menu.  Since several CRAN packages (per 
initial posting) still failed, I guess there's something inside 
update.packages that doesn't get cleaned out.

Once I removed all the "updated" libraries and did a fresh install, 
things seem to be OK.
Thanks to P.D. and D. M. for your suggestions.

On 5/31/25 4:42 AM, peter dalgaard wrote:
> Works fine here.
> 
> Did you do something with your packages after installing?
> 
> Reason that I ask: A number of people have been shooting themselves in the foot by copying old package directories over new ones - including the non-CRAN system packages that update.packages() can't fix.
> 
> Or, if you have packages in a separate non-versioned library, then you may need update.packages(checkBuilt=TRUE).
> 
> -pd
> 
>> On 30 May 2025, at 23.00, Carl Witthoft <carl using witthoft.com> wrote:
>>
>> I suspect this is something simple I forgot to update or delete, but:
>> iMac x86 recently upgraded to 15.5 Sequoia.
>>
>> I installed R 4.5 from CRAN.
>> then tried to install the "gmp" library and:
>>
>> Error: package or namespace load failed for ‘gmp’ in get(Info[i, 1], envir = env):
>> lazy-load database '/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/gmp/R/gmp.rdb' is corrupt
>> In addition: Warning message:
>> In get(Info[i, 1], envir = env) :
>>   internal error 1 in R_decompress1 with libdeflate
>>
>> Then,
>> library(ggplot2)
>> Error: package or namespace load failed for ‘ggplot2’ in dyn.load(file, DLLpath = DLLpath, ...):
>> unable to load shared object '/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/glue/libs/glue.so':
>> dlopen(/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/glue/libs/glue.so, 0x0006): Library not loaded: /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib
>>   Referenced from: <E900C54A-FB6D-371D-B50B-512EB8D2F868> /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/glue/libs/glue.so
>>   Reason: tried: '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib' (no such file), '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/lib/libR.dylib' (no such file), '/usr/local/lib/libR.dylib' (no such file), '/usr/lib/libR.dylib' (no such file, not in dy
>>
>> So I need to clear something out that's pointing to the 4.4 paths.  But aged me forgets what that is.
>>
>>
>>
>>
>>
>> -- 
>> Carl Witthoft
>> personal: carl using witthoft.com
>> The Witthoft Group, Consulting
>> https://witthoftgroup.weebly.com/
>>
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> 

-- 
Carl Witthoft
personal: carl using witthoft.com
The Witthoft Group, Consulting
https://witthoftgroup.weebly.com/