[R-SIG-Mac] R 4.1 for my Mac M1 crashing on installing packages

[Renato Morais]

Hi Simon,

I'm happy to, I'm just not sure how to check previous logs...

On another note, and I'm sure this is a problem with the compiler, now that
my packages are installed, the ones I had to compile from the source cannot
be loaded.

Error: package or namespace load failed for ‘nlme’ in dyn.load(file,
DLLpath = DLLpath, ...):

 unable to load shared object
'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so':

  dlopen(/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so,
6): Library not loaded: /opt/R/arm64/gfortran/lib/libgfortran.5.dylib

  Referenced from:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/nlme/libs/nlme.so

  Reason: image not found


Any insights on how that could be solved?


Thanks again for your help,

Renato

On Thu, 20 May 2021 at 07:00, Simon Urbanek <simon.urbanek using r-project.org>
wrote:

> Renato,
>
> I'm glad you have work-around, but I'd still like to get to the core of
> the issue, we don't want R to crash ;).
> Can you, please, check your Console log to see if there is a trace of the
> crash and if so, send it to me?
> Also are you using R in the Terminal or the R.app GUI?
>
> Thanks,
> Simon
>
>
> > On 20/05/2021, at 12:07 AM, Renato Morais <renatomoraisaraujo using gmail.com>
> wrote:
> >
> > Thanks Jeroen, fixing the repo connected me with CRAN (it was defaulted
> to
> > '@CRAN@' I think)!
> >
> > Cheers,
> > Renato
> >
> > On Wed, 19 May 2021 at 21:00, Jeroen Ooms <jeroen using berkeley.edu> wrote:
> >
> >> On Wed, May 19, 2021 at 11:34 AM Renato Morais
> >> <renatomoraisaraujo using gmail.com> wrote:
> >>>
> >>> Hi all,
> >>>
> >>> I'm new here, so please forgive my clumsy error reporting.
> >>>
> >>> I have just downloaded *R-4.1-branch.pkg* for my Mac M1, as I wanted to
> >>> finally enjoy a native normal-speed R (for some reason running v 4.0.5
> on
> >>> Rosetta was extremely slow on my machine). I also installed the latest
> >>> XQuartz, as indicated (v 2.8.1).
> >>>
> >>> Sad story is, when I try a simple install.packages command, it first
> >>> appears to ignore me, after returning 'Please select a CRAN mirror for
> >> use
> >>> in this session'. if I insist, it crashes. No useful error messages.
> >> Trying
> >>> via the Package Installer tab didn't work either. It doesn't find any
> >>> packages, indeed it crashes if I ask it to load the list.
> >>
> >> This indeed sounds like an xQuartz issue, failing to popup the mirror
> >> selection menu. Does everything work if you manually set your CRAN
> >> mirror first, e.g:
> >>
> >>  options(repos=c(CRAN="https://cloud.r-project.org"))
> >>
> >> Alternatively you can disable the popup menus all-together using:
> >>
> >>  options(menu.graphics=FALSE)
> >>
> >> Which should probably be the default.
> >>
> >
> >
> > --
> >
> > *Renato Morais | **ARC Postdoctoral Research Associate*
> >
> > Research Hub for Coral Reef Ecosystem Functions
> >
> > College of Science and Engineering
> >
> > ARC Centre of Excellence for Coral Reef Studies
> >
> > James Cook University
> >
> > Townsville, Queensland, Australia
> >
> > https://www.reeffunctionhub.org
> >
> > http://thebellwoodreeffishlab.com
> >
> >
> >
> > --
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac using r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >
>
>

-- 

*Renato Morais | **ARC Postdoctoral Research Associate*

Research Hub for Coral Reef Ecosystem Functions

College of Science and Engineering

ARC Centre of Excellence for Coral Reef Studies

James Cook University

Townsville, Queensland, Australia

https://www.reeffunctionhub.org

http://thebellwoodreeffishlab.com



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