[R-SIG-Mac] possible bug in R's make install

[Kasper Daniel Hansen]

I'll file a bug report from memory.

On Tue, May 18, 2021 at 12:46 AM Simon Urbanek <simon.urbanek using r-project.org>
wrote:

> Has anyone reported this bug at bugs.R-project.org? Quick search doesn't
> yield anything - Peter can you post the reference, please, if you reported
> it there? Since this is not a Mac-specific issue that's where should go if
> it is to be fixed.
>
> Cheers,
> Simon
>
>
> > On May 18, 2021, at 12:32 AM, Kasper Daniel Hansen <
> kasperdanielhansen using gmail.com> wrote:
> >
> > This bug is still present in the R-4.1.
> >
> > Best,
> > Kasper
> >
> > On Fri, Sep 28, 2018 at 8:02 PM Peter Langfelder <
> peter.langfelder using gmail.com>
> > wrote:
> >
> >> For what it's worth, the same bug is present on linux when compiling R
> >> with a custom BLAS (either ATLAS or OpenBLAS). The directory needs to
> >> be made by hand first. I beleive I have reported this some time ago
> >> but no action was taken. Compiling R with R internal BLAS does not
> >> results in the error.
> >>
> >> Peter
> >> On Fri, Sep 28, 2018 at 10:52 AM Kasper Daniel Hansen
> >> <kasperdanielhansen using gmail.com> wrote:
> >>>
> >>> I am trying to compile and install R under High Sierra with Accelerate
> >> BLAS
> >>> but with R lapack.
> >>>
> >>> My relevant configure call is   --with-blas="-framework Accelerate" but
> >>> omitting --with-lapack. Full call is pasted at the end of this email
> >>>
> >>> I can do
> >>>  make
> >>>  make check
> >>> but make install fails with
> >>>
> >>> make[2]: Nothing to be done for `install'.
> >>> /usr/local/clang6/bin/clang -I. -I../../src/include
> >>> -I../../../R-3.5.x-src/src/include -I/opt/X11/include
> >> -I/usr/local/include
> >>> -DHAVE_CONFIG_H    -Wall -mtune=native -g -O2  -L/usr/local/clang6/lib
> >>> -L/usr/local/lib -L/usr/local/opt/tcl-tk/lib
> >>> -DR_HOME='"/usr/local/R/R-3.5.x/lib/R"' \
> >>>  -o Rscript ../../../R-3.5.x-src/src/unix/Rscript.c
> >>> mkdir /usr/local/R/R-3.5.x/lib/R/bin/exec
> >>> mkdir /usr/local/R/R-3.5.x/lib/R/modules
> >>> cp: /usr/local/R/R-3.5.x/lib/R/lib/libRlapack.dylib: No such file or
> >>> directory
> >>> make[3]: *** [install] Error 1
> >>> make[2]: *** [install] Error 1
> >>> make[1]: *** [install] Error 1
> >>> make: *** [install] Error 1
> >>>
> >>> I manually verified that libRlapack.dylib had been build in the
> building
> >>> directory's "lib".  I then just did
> >>>
> >>> sudo mkdir /usr/local/R/R-3.5.x/lib/R/lib
> >>>
> >>> (my installation directory is /usr/local/R/R-3.5.x) and redid make
> >> install
> >>> which now worked.  I get
> >>>
> >>> $ ls /usr/local/R/R-3.5.x/lib/R/lib
> >>> libRlapack.dylib
> >>>
> >>> My _guess_ is that since I am using R's lapack and system BLAS that the
> >>> RHOME/lib directory does not get created.
> >>>
> >>> Btw., this might be a bad idea (happy to hear about this) but the
> >>> installation should work since I can do make check
> >>>
> >>> Kasper
> >>>
> >>> configure
> >>>
> >>> ../${SRCDIR}/configure SHELL='/bin/bash' \
> >>>  --prefix=/usr/local/R/R-${R_VERSION} --disable-R-framework\
> >>>  CC="/usr/local/clang6/bin/clang" \
> >>>  CXX="/usr/local/clang6/bin/clang++" \
> >>>  F77="/usr/local/gfortran/bin/gfortran" \
> >>>  FC="$F77" \
> >>>  OBJC="clang" \
> >>>  CFLAGS="-Wall -mtune=native -g -O2" \
> >>>  CXXFLAGS="-Wall -mtune=natuve -g -O2" \
> >>>  OBJCFLAGS="-Wall -mtune=native -g -O2 -fobjc-exceptions" \
> >>>  F77FLAGS="-Wall -g -O2 -mtune=generic" \
> >>>  FCFLAGS="$F77FLAGS" \
> >>>  FLIBS="-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0
> >>> -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm" \
> >>>  LDFLAGS="-L/usr/local/clang6/lib -L/usr/local/lib" \
> >>>  DYLD_FALLBACK_LIBRARY_PATH="/usr/local/clang6/lib:/usr/local/lib" \
> >>>
> >>>
> >>
> PKG_CONFIG_PATH="/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig"
> >>> \
> >>>  JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Home" \
> >>>  JAVA_CPPFLAGS="-I/System/Library/Frameworks/JavaVM.framework/Headers"
> \
> >>>  JAVA_LD_LIBRARY_PATH="" \
> >>>  JAVA_LIBS="-framework JavaVM" \
> >>>  --enable-memory-profiling\
> >>>  --x-includes=/opt/X11/include --x-libraries=/opt/X11/lib\
> >>>  -with-tcltk=/usr/local/opt/tcl-tk/lib\
> >>>  --with-blas="-framework Accelerate" | tee ../configure-${R_VERSION}
> >>>
> >>>        [[alternative HTML version deleted]]
> >>>
> >>> _______________________________________________
> >>> R-SIG-Mac mailing list
> >>> R-SIG-Mac using r-project.org
> >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >>
> >
> >
> > --
> > Best,
> > Kasper
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac using r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >
>
>

-- 
Best,
Kasper

	[[alternative HTML version deleted]]