[R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict
Richard M. Heiberger
rmh @end|ng |rom temp|e@edu
Fri May 29 20:28:05 CEST 2020
I tried the same thing in Windows. R-3.6.3 and R-4.0.0
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> > options(chmhelp=FALSE, help_type="text")
> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) # rather take the ESS one
+ options(pager='console')
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient.exe', show.error.locations=TRUE)
> library(rgl)
> plot(1:10)
> rgl.quit()
> search()
[1] ".GlobalEnv" "ESSR" "package:stats"
[4] "package:graphics" "package:grDevices" "package:utils"
[7] "package:datasets" "package:methods" "Autoloads"
[10] "package:base"
> library(rgl)
Error: package or namespace load failed for 'rgl':
.onLoad failed in loadNamespace() for 'rgl', details:
call: rgl.init(initValue, onlyNULL)
error: window class registration failed
>
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> > options(chmhelp=FALSE, help_type="text")
> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) # rather take the ESS one
+ options(pager='console')
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient.exe', show.error.locations=TRUE)
> library(rgl)
> search()
[1] ".GlobalEnv" "package:rgl" "ESSR"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> rgl.quit()
> library(rgl)
Error: package or namespace load failed for 'rgl':
.onLoad failed in loadNamespace() for 'rgl', details:
call: rgl.init(initValue, onlyNULL)
error: window class registration failed
>
On Fri, May 29, 2020 at 2:21 PM Richard M. Heiberger <rmh using temple.edu> wrote:
>
> I attempted to update xquartz when I updated to Catalina, and the same
> number is still the current version number.
>
> Here is a related issue, attached tmp2.txt is the R transcript.
> The interesting thing here is that rgl.quit() prevents rgl from being
> reattached.
>
> Is there an rgl equivalent for dev.cur()?
>
> On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch <murdoch.duncan using gmail.com> wrote:
> >
> > On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote:
> > > I have the same Xquartz as you.
> >
> > I'd guess it should be updated. Generally XQuartz needs updates with
> > every MacOS release, and your 10.15.4 is two releases further along than
> > my 10.13.6.
> >
> > > I have rgl-0.100.50 from CRAN
> >
> > You could update that, but I doubt if it would make any difference.
> >
> > > Apple is macOS Catalina, Version 10.15.4
> > > Do you need hardware information?
> > > MacBpok Air (13 -inch, Mid 2012)
> > > Processor 2GHz Dual-Core Intel Core i7
> > > Memory 8 GB 1600 MHz DDR3
> > > Graphics Intel HD Graphics 4000 1536 MB
> >
> > I think the XQuartz issue is most likely to help, but if it doesn't, I'm
> > not sure what I could suggest: I don't have Catalina.
> >
> > Duncan Murdoch
> > >
> > >
> > > from the Terminal App:
> > > The Apple Crash Report is in the attached tmp.txt
> > > I didn't send it to Apple.
> > >
> > > R version 4.0.0 (2020-04-24) -- "Arbor Day"
> > >
> > > Copyright (C) 2020 The R Foundation for Statistical Computing
> > >
> > > Platform: x86_64-apple-darwin17.0 (64-bit)
> > >
> > >
> > > R is free software and comes with ABSOLUTELY NO WARRANTY.
> > >
> > > You are welcome to redistribute it under certain conditions.
> > >
> > > Type 'license()' or 'licence()' for distribution details.
> > >
> > >
> > > Natural language support but running in an English locale
> > >
> > >
> > > R is a collaborative project with many contributors.
> > >
> > > Type 'contributors()' for more information and
> > >
> > > 'citation()' on how to cite R or R packages in publications.
> > >
> > >
> > > Type 'demo()' for some demos, 'help()' for on-line help, or
> > >
> > > 'help.start()' for an HTML browser interface to help.
> > >
> > > Type 'q()' to quit R.
> > >
> > >
> > >> library(rgl)
> > >
> > >> plot(1:10)
> > >
> > >> 2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> > >
> > > 2020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due to
> > > uncaught exception 'NSInternalInconsistencyException', reason:
> > > 'NSScreen reconfig must only happen on the main thread.'
> > >
> > > *** First throw call stack:
> > >
> > > (
> > >
> > > 0 CoreFoundation 0x00007fff371698d7
> > > __exceptionPreprocess + 250
> > >
> > > 1 libobjc.A.dylib 0x00007fff6ff47a9e
> > > objc_exception_throw + 48
> > >
> > > 2 CoreFoundation 0x00007fff37192bb0
> > > +[NSException raise:format:arguments:] + 88
> > >
> > > 3 Foundation 0x00007fff398de456
> > > -[NSAssertionHandler
> > > handleFailureInFunction:file:lineNumber:description:] + 166
> > >
> > > 4 AppKit 0x00007fff34503083
> > > +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> > > 361
> > >
> > > 5 AppKit 0x00007fff34e4bda8
> > > _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> > >
> > > 6 AppKit 0x00007fff34502c85
> > > -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> > >
> > > 7 AppKit 0x00007fff345024dc
> > > _NSCGSDockMessageReceive + 268
> > >
> > > 8 HIToolbox 0x00007fff35d34a3c
> > > _ZL12DockCallbackjjPvS_ + 1987
> > >
> > > 9 HIServices 0x00007fff3539c8ec
> > > dockClientNotificationProc + 217
> > >
> > > 10 SkyLight 0x00007fff6626f174
> > > _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> > > 1002
> > >
> > > 11 SkyLight 0x00007fff6626de71
> > > CGSSnarfAndDispatchDatagrams + 1671
> > >
> > > 12 SkyLight 0x00007fff6649d5a5
> > > SLSGetNextEventRecordInternal + 83
> > >
> > > 13 SkyLight 0x00007fff6633bfbe
> > > SLEventCreateNextEvent + 136
> > >
> > > 14 libXplugin.1.dylib 0x000000010686df0c
> > > ___xp_init_service_cg_event_port_block_invoke + 104
> > >
> > > 15 libdispatch.dylib 0x00007fff7108d658
> > > _dispatch_client_callout + 8
> > >
> > > 16 libdispatch.dylib 0x00007fff7108f818
> > > _dispatch_continuation_pop + 414
> > >
> > > 17 libdispatch.dylib 0x00007fff7109f4be
> > > _dispatch_source_invoke + 2084
> > >
> > > 18 libdispatch.dylib 0x00007fff71092af6
> > > _dispatch_lane_serial_drain + 263
> > >
> > > 19 libdispatch.dylib 0x00007fff710935d6
> > > _dispatch_lane_invoke + 363
> > >
> > > 20 libdispatch.dylib 0x00007fff7109cc09
> > > _dispatch_workloop_worker_thread + 596
> > >
> > > 21 libsystem_pthread.dylib 0x00007fff712eba3d
> > > _pthread_wqthread + 290
> > >
> > > 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15
> > >
> > > )
> > >
> > > libc++abi.dylib: terminating with uncaught exception of type NSException
> > >
> > > zsh: abort R
> > >
> > > rmh using rmhs-Air ~ %
> > >
> > >
> > > On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch
> > > <murdoch.duncan using gmail.com> wrote:
> > >>
> > >> I'm not seeing that with R-patched r78557, run from the console. I'm
> > >> not sure I have the same MacOS version as you (R prints the same thing,
> > >> Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl
> > >> 0.100.54. I'd guess the version of XQuartz may be important: I'm not
> > >> seeing rgl in the call stack, but libXplugin is there. Mine is "XQuartz
> > >> 2.7.11 (xorg-server 1.18.4)".
> > >>
> > >> Duncan Murdoch
> > >>
> > >>
> > >>
> > >> On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:
> > >>> R version 4.0.0 (2020-04-24) -- "Arbor Day"
> > >>> Copyright (C) 2020 The R Foundation for Statistical Computing
> > >>> Platform: x86_64-apple-darwin17.0 (64-bit)
> > >>>
> > >>> R is free software and comes with ABSOLUTELY NO WARRANTY.
> > >>> You are welcome to redistribute it under certain conditions.
> > >>> Type 'license()' or 'licence()' for distribution details.
> > >>>
> > >>> Natural language support but running in an English locale
> > >>>
> > >>> R is a collaborative project with many contributors.
> > >>> Type 'contributors()' for more information and
> > >>> 'citation()' on how to cite R or R packages in publications.
> > >>>
> > >>> Type 'demo()' for some demos, 'help()' for on-line help, or
> > >>> 'help.start()' for an HTML browser interface to help.
> > >>> Type 'q()' to quit R.
> > >>>
> > >>>> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) options(pager='cat') # rather take the ESS one
> > >>>> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient', show.error.locations=TRUE)
> > >>>> version
> > >>> _
> > >>> platform x86_64-apple-darwin17.0
> > >>> arch x86_64
> > >>> os darwin17.0
> > >>> system x86_64, darwin17.0
> > >>> status
> > >>> major 4
> > >>> minor 0.0
> > >>> year 2020
> > >>> month 04
> > >>> day 24
> > >>> svn rev 78286
> > >>> language R
> > >>> version.string R version 4.0.0 (2020-04-24)
> > >>> nickname Arbor Day
> > >>>>
> > >>>> library(rgl)
> > >>>> plot(1:10)
> > >>>>
> > >>>
> > >>> Process R abort trap: 6 at Fri May 29 11:32:59 2020
> > >>> 2020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOL
> > >>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
> > >>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> > >>> 2020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to
> > >>> uncaught exception 'NSInternalInconsistencyException', reason:
> > >>> 'NSScreen reconfig must only happen on the main thread.'
> > >>> *** First throw call stack:
> > >>> (
> > >>> 0 CoreFoundation 0x00007fff371698d7
> > >>> __exceptionPreprocess + 250
> > >>> 1 libobjc.A.dylib 0x00007fff6ff47a9e
> > >>> objc_exception_throw + 48
> > >>> 2 CoreFoundation 0x00007fff37192bb0
> > >>> +[NSException raise:format:arguments:] + 88
> > >>> 3 Foundation 0x00007fff398de456
> > >>> -[NSAssertionHandler
> > >>> handleFailureInFunction:file:lineNumber:description:] + 166
> > >>> 4 AppKit 0x00007fff34503083
> > >>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> > >>> 361
> > >>> 5 AppKit 0x00007fff34e4bda8
> > >>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> > >>> 6 AppKit 0x00007fff34502c85
> > >>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> > >>> 7 AppKit 0x00007fff345024dc
> > >>> _NSCGSDockMessageReceive + 268
> > >>> 8 HIToolbox 0x00007fff35d34a3c
> > >>> _ZL12DockCallbackjjPvS_ + 1987
> > >>> 9 HIServices 0x00007fff3539c8ec
> > >>> dockClientNotificationProc + 217
> > >>> 10 SkyLight 0x00007fff6626f174
> > >>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> > >>> 1002
> > >>> 11 SkyLight 0x00007fff6626de71
> > >>> CGSSnarfAndDispatchDatagrams + 1671
> > >>> 12 SkyLight 0x00007fff6649d5a5
> > >>> SLSGetNextEventRecordInternal + 83
> > >>> 13 SkyLight 0x00007fff6633bfbe
> > >>> SLEventCreateNextEvent + 136
> > >>> 14 libXplugin.1.dylib 0x000000010ffa5f0c
> > >>> ___xp_init_service_cg_event_port_block_invoke + 104
> > >>> 15 libdispatch.dylib 0x00007fff7108d658
> > >>> _dispatch_client_callout + 8
> > >>> 16 libdispatch.dylib 0x00007fff7108f818
> > >>> _dispatch_continuation_pop + 414
> > >>> 17 libdispatch.dylib 0x00007fff7109f4be
> > >>> _dispatch_source_invoke + 2084
> > >>> 18 libdispatch.dylib 0x00007fff71092af6
> > >>> _dispatch_lane_serial_drain + 263
> > >>> 19 libdispatch.dylib 0x00007fff710935d6
> > >>> _dispatch_lane_invoke + 363
> > >>> 20 libdispatch.dylib 0x00007fff7109cc09
> > >>> _dispatch_workloop_worker_thread + 596
> > >>> 21 libsystem_pthread.dylib 0x00007fff712eba3d
> > >>> _pthread_wqthread + 290
> > >>> 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15
> > >>> )
> > >>> libc++abi.dylib: terminating with uncaught exception of type NSException
> > >>>
> > >>> _______________________________________________
> > >>> R-SIG-Mac mailing list
> > >>> R-SIG-Mac using r-project.org
> > >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> > >>>
> > >>
> >
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