[R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict
Richard M. Heiberger
rmh @end|ng |rom temp|e@edu
Fri May 29 20:21:13 CEST 2020
I attempted to update xquartz when I updated to Catalina, and the same
number is still the current version number.
Here is a related issue, attached tmp2.txt is the R transcript.
The interesting thing here is that rgl.quit() prevents rgl from being
reattached.
Is there an rgl equivalent for dev.cur()?
On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch <murdoch.duncan using gmail.com> wrote:
>
> On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote:
> > I have the same Xquartz as you.
>
> I'd guess it should be updated. Generally XQuartz needs updates with
> every MacOS release, and your 10.15.4 is two releases further along than
> my 10.13.6.
>
> > I have rgl-0.100.50 from CRAN
>
> You could update that, but I doubt if it would make any difference.
>
> > Apple is macOS Catalina, Version 10.15.4
> > Do you need hardware information?
> > MacBpok Air (13 -inch, Mid 2012)
> > Processor 2GHz Dual-Core Intel Core i7
> > Memory 8 GB 1600 MHz DDR3
> > Graphics Intel HD Graphics 4000 1536 MB
>
> I think the XQuartz issue is most likely to help, but if it doesn't, I'm
> not sure what I could suggest: I don't have Catalina.
>
> Duncan Murdoch
> >
> >
> > from the Terminal App:
> > The Apple Crash Report is in the attached tmp.txt
> > I didn't send it to Apple.
> >
> > R version 4.0.0 (2020-04-24) -- "Arbor Day"
> >
> > Copyright (C) 2020 The R Foundation for Statistical Computing
> >
> > Platform: x86_64-apple-darwin17.0 (64-bit)
> >
> >
> > R is free software and comes with ABSOLUTELY NO WARRANTY.
> >
> > You are welcome to redistribute it under certain conditions.
> >
> > Type 'license()' or 'licence()' for distribution details.
> >
> >
> > Natural language support but running in an English locale
> >
> >
> > R is a collaborative project with many contributors.
> >
> > Type 'contributors()' for more information and
> >
> > 'citation()' on how to cite R or R packages in publications.
> >
> >
> > Type 'demo()' for some demos, 'help()' for on-line help, or
> >
> > 'help.start()' for an HTML browser interface to help.
> >
> > Type 'q()' to quit R.
> >
> >
> >> library(rgl)
> >
> >> plot(1:10)
> >
> >> 2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(), /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> >
> > 2020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due to
> > uncaught exception 'NSInternalInconsistencyException', reason:
> > 'NSScreen reconfig must only happen on the main thread.'
> >
> > *** First throw call stack:
> >
> > (
> >
> > 0 CoreFoundation 0x00007fff371698d7
> > __exceptionPreprocess + 250
> >
> > 1 libobjc.A.dylib 0x00007fff6ff47a9e
> > objc_exception_throw + 48
> >
> > 2 CoreFoundation 0x00007fff37192bb0
> > +[NSException raise:format:arguments:] + 88
> >
> > 3 Foundation 0x00007fff398de456
> > -[NSAssertionHandler
> > handleFailureInFunction:file:lineNumber:description:] + 166
> >
> > 4 AppKit 0x00007fff34503083
> > +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> > 361
> >
> > 5 AppKit 0x00007fff34e4bda8
> > _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> >
> > 6 AppKit 0x00007fff34502c85
> > -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> >
> > 7 AppKit 0x00007fff345024dc
> > _NSCGSDockMessageReceive + 268
> >
> > 8 HIToolbox 0x00007fff35d34a3c
> > _ZL12DockCallbackjjPvS_ + 1987
> >
> > 9 HIServices 0x00007fff3539c8ec
> > dockClientNotificationProc + 217
> >
> > 10 SkyLight 0x00007fff6626f174
> > _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> > 1002
> >
> > 11 SkyLight 0x00007fff6626de71
> > CGSSnarfAndDispatchDatagrams + 1671
> >
> > 12 SkyLight 0x00007fff6649d5a5
> > SLSGetNextEventRecordInternal + 83
> >
> > 13 SkyLight 0x00007fff6633bfbe
> > SLEventCreateNextEvent + 136
> >
> > 14 libXplugin.1.dylib 0x000000010686df0c
> > ___xp_init_service_cg_event_port_block_invoke + 104
> >
> > 15 libdispatch.dylib 0x00007fff7108d658
> > _dispatch_client_callout + 8
> >
> > 16 libdispatch.dylib 0x00007fff7108f818
> > _dispatch_continuation_pop + 414
> >
> > 17 libdispatch.dylib 0x00007fff7109f4be
> > _dispatch_source_invoke + 2084
> >
> > 18 libdispatch.dylib 0x00007fff71092af6
> > _dispatch_lane_serial_drain + 263
> >
> > 19 libdispatch.dylib 0x00007fff710935d6
> > _dispatch_lane_invoke + 363
> >
> > 20 libdispatch.dylib 0x00007fff7109cc09
> > _dispatch_workloop_worker_thread + 596
> >
> > 21 libsystem_pthread.dylib 0x00007fff712eba3d
> > _pthread_wqthread + 290
> >
> > 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15
> >
> > )
> >
> > libc++abi.dylib: terminating with uncaught exception of type NSException
> >
> > zsh: abort R
> >
> > rmh using rmhs-Air ~ %
> >
> >
> > On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch
> > <murdoch.duncan using gmail.com> wrote:
> >>
> >> I'm not seeing that with R-patched r78557, run from the console. I'm
> >> not sure I have the same MacOS version as you (R prints the same thing,
> >> Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl
> >> 0.100.54. I'd guess the version of XQuartz may be important: I'm not
> >> seeing rgl in the call stack, but libXplugin is there. Mine is "XQuartz
> >> 2.7.11 (xorg-server 1.18.4)".
> >>
> >> Duncan Murdoch
> >>
> >>
> >>
> >> On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:
> >>> R version 4.0.0 (2020-04-24) -- "Arbor Day"
> >>> Copyright (C) 2020 The R Foundation for Statistical Computing
> >>> Platform: x86_64-apple-darwin17.0 (64-bit)
> >>>
> >>> R is free software and comes with ABSOLUTELY NO WARRANTY.
> >>> You are welcome to redistribute it under certain conditions.
> >>> Type 'license()' or 'licence()' for distribution details.
> >>>
> >>> Natural language support but running in an English locale
> >>>
> >>> R is a collaborative project with many contributors.
> >>> Type 'contributors()' for more information and
> >>> 'citation()' on how to cite R or R packages in publications.
> >>>
> >>> Type 'demo()' for some demos, 'help()' for on-line help, or
> >>> 'help.start()' for an HTML browser interface to help.
> >>> Type 'q()' to quit R.
> >>>
> >>>> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager'))) options(pager='cat') # rather take the ESS one
> >>>> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient', show.error.locations=TRUE)
> >>>> version
> >>> _
> >>> platform x86_64-apple-darwin17.0
> >>> arch x86_64
> >>> os darwin17.0
> >>> system x86_64, darwin17.0
> >>> status
> >>> major 4
> >>> minor 0.0
> >>> year 2020
> >>> month 04
> >>> day 24
> >>> svn rev 78286
> >>> language R
> >>> version.string R version 4.0.0 (2020-04-24)
> >>> nickname Arbor Day
> >>>>
> >>>> library(rgl)
> >>>> plot(1:10)
> >>>>
> >>>
> >>> Process R abort trap: 6 at Fri May 29 11:32:59 2020
> >>> 2020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOL
> >>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
> >>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> >>> 2020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to
> >>> uncaught exception 'NSInternalInconsistencyException', reason:
> >>> 'NSScreen reconfig must only happen on the main thread.'
> >>> *** First throw call stack:
> >>> (
> >>> 0 CoreFoundation 0x00007fff371698d7
> >>> __exceptionPreprocess + 250
> >>> 1 libobjc.A.dylib 0x00007fff6ff47a9e
> >>> objc_exception_throw + 48
> >>> 2 CoreFoundation 0x00007fff37192bb0
> >>> +[NSException raise:format:arguments:] + 88
> >>> 3 Foundation 0x00007fff398de456
> >>> -[NSAssertionHandler
> >>> handleFailureInFunction:file:lineNumber:description:] + 166
> >>> 4 AppKit 0x00007fff34503083
> >>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> >>> 361
> >>> 5 AppKit 0x00007fff34e4bda8
> >>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> >>> 6 AppKit 0x00007fff34502c85
> >>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> >>> 7 AppKit 0x00007fff345024dc
> >>> _NSCGSDockMessageReceive + 268
> >>> 8 HIToolbox 0x00007fff35d34a3c
> >>> _ZL12DockCallbackjjPvS_ + 1987
> >>> 9 HIServices 0x00007fff3539c8ec
> >>> dockClientNotificationProc + 217
> >>> 10 SkyLight 0x00007fff6626f174
> >>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> >>> 1002
> >>> 11 SkyLight 0x00007fff6626de71
> >>> CGSSnarfAndDispatchDatagrams + 1671
> >>> 12 SkyLight 0x00007fff6649d5a5
> >>> SLSGetNextEventRecordInternal + 83
> >>> 13 SkyLight 0x00007fff6633bfbe
> >>> SLEventCreateNextEvent + 136
> >>> 14 libXplugin.1.dylib 0x000000010ffa5f0c
> >>> ___xp_init_service_cg_event_port_block_invoke + 104
> >>> 15 libdispatch.dylib 0x00007fff7108d658
> >>> _dispatch_client_callout + 8
> >>> 16 libdispatch.dylib 0x00007fff7108f818
> >>> _dispatch_continuation_pop + 414
> >>> 17 libdispatch.dylib 0x00007fff7109f4be
> >>> _dispatch_source_invoke + 2084
> >>> 18 libdispatch.dylib 0x00007fff71092af6
> >>> _dispatch_lane_serial_drain + 263
> >>> 19 libdispatch.dylib 0x00007fff710935d6
> >>> _dispatch_lane_invoke + 363
> >>> 20 libdispatch.dylib 0x00007fff7109cc09
> >>> _dispatch_workloop_worker_thread + 596
> >>> 21 libsystem_pthread.dylib 0x00007fff712eba3d
> >>> _pthread_wqthread + 290
> >>> 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread + 15
> >>> )
> >>> libc++abi.dylib: terminating with uncaught exception of type NSException
> >>>
> >>> _______________________________________________
> >>> R-SIG-Mac mailing list
> >>> R-SIG-Mac using r-project.org
> >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >>>
> >>
>
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