[R-SIG-Mac] Cannot compile Fortran on macOS
Adelchi Azzalini
@zz@||n| @end|ng |rom @t@t@un|pd@|t
Tue May 19 15:45:50 CEST 2020
Hi.
In essence, my problem is that I cannot install a package which requires Fortran-77 compilation on my Mac.
More in detail, this is my own package 'mnormt' which exists on CRAN since 2006; it is currently at version 1.5-7. It has been developed in successive versions on a Linux machine, where it compiles with no problems. The macOS and MS-windows versions are created on CRAN, where it passes all pertaining checks.
Now, in the new pandemic world, I need create a new version of the package, but working from home, hence using my Mac laptop instead of the Linux desktop as in the past. Unfortunately, compilation or loading does not work. If I run
R CMD check mnormt_1.5-7.tar.gz
first I get a bunch of warning messages such as
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) .... [-Wconversion]
Warning: ‘lxchng’ may be used uninitialized in this function [-Wmaybe-uninitialized]
Warning: Label 10 at (1) defined but not used [-Wunused-label]
and finally it crashes with
Error: package or namespace load failed for ‘mnormt’:
.onLoad failed in loadNamespace() for 'mnormt', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Users/aa/SW-aa/Pkg-mnormt/mnormt.Rcheck/00LOCK-mnormt/00new/mnormt/libs/mnormt.so':
dlopen(/Users/aa/SW-aa/Pkg-mnormt/mnormt.Rcheck/00LOCK-mnormt/00new/mnormt/libs/mnormt.so, 6): Symbol not found: ___addtf3
Referenced from: /usr/local/lib/libquadmath.0.dylib
Expected in: /usr/local/lib/libgcc_s_x86_64.1.dylib
in /usr/local/lib/libquadmath.0.dylib
Error: loading failed
Needless to say, I have no idea what this "addtf3" is or it should be. There is no such a symbol in the Fortran code.
I believe to have installed all ingredients indicated at https://mac.r-project.org/tools/
See the list below with details about my system and other installed tools.
Any suggestions for sorting this out?
Adelchi Azzalini
---------------------------------------------------
Installation info:
R> R.version
_
platform x86_64-apple-darwin17.0
arch x86_64
os darwin17.0
system x86_64, darwin17.0
status
major 4
minor 0.0
year 2020
month 04
day 24
svn rev 78286
language R
version.string R version 4.0.0 (2020-04-24)
nickname Arbor Day
--- macOS Mojave 10.14.6
--- Xcode version 11.3.1
--- Fortran
[aa using mac-2013:~] gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin18/8.2.0/lto-wrapper
Target: x86_64-apple-darwin18
Configured with: ../gcc-8.2.0/configure --prefix=/usr/local/gfortran --with-gmp=/Users/fx/devel/gcc/build_package/deps --enable-languages=c,c++,fortran,objc,obj-c++ --build=x86_64-apple-darwin18 --disable-multilib --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
Thread model: posix
gcc version 8.2.0 (GCC)
[aa using mac-2013:~] echo $PATH
.:/Users/aa/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin/:/usr/X11R6/bin:/opt/local/bin:/Library/TeX/texbin:/usr/local/gfortran/bin
-- other tools indicated at https://mac.r-project.org/tools/
xz-5.2.5/ is installed
PCRE2 10.34 built with --disable-jit
bzip2 Version 1.0.6 is installed
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