[R-SIG-Mac] Packages with updated spatial libraries.

Mon Jun 22 21:34:46 CEST 2020

Dear Roy, thanks for the message. Is it possible that the sf version you
use links to an older version of GDAL/PROJ than the new rgdal does? In
other words: if you update sf from CRAN, does the error persist?

Many regards,

On 6/22/20 9:28 PM, Roy Mendelssohn - NOAA Federal wrote:
> I installed the whole suite available through Prof. Ripley's efforts, and finally have gotten time to do extensive testing.  I just ran into a problem with code that worked previously. It doesn't break all the mapping code,  only some. The error I get is given below.  And yes I realize that this by itself it isn't much help.  It is a function calling a function in another package that causes the problem.  I am going to have to get in with the debugger and see what is actually being passed, and I will post what is going on in more detail when I figure it out.  This is more just a heads-up that the new versions can indeed break things in existing code.  This is what I was hoping to find out,  because it is going to take some time to pinpoint where.
> 
> -Roy
> 
>> Error in st_crs.character(comment(x)) : invalid crs: GEOGCRS["unknown",
>>     DATUM["World Geodetic System 1984",
>>         ELLIPSOID["WGS 84",6378137,298.257223563,
>>             LENGTHUNIT["metre",1]],
>>         ID["EPSG",6326]],
>>     PRIMEM["Greenwich",0,
>>         ANGLEUNIT["degree",0.0174532925199433],
>>         ID["EPSG",8901]],
>>     CS[ellipsoidal,2],
>>         AXIS["longitude",east,
>>             ORDER[1],
>>             ANGLEUNIT["degree",0.0174532925199433,
>>                 ID["EPSG",9122]]],
>>         AXIS["latitude",north,
>>             ORDER[2],
>>             ANGLEUNIT["degree",0.0174532925199433,
>>                 ID["EPSG",9122]]]]
>> In addition: Warning messages:
>> 1: In rgdal::rawTransform(projfrom, projto, nrow(xy), xy[, 1], xy[,  :
>>   Using PROJ not WKT2 strings
>> 2: In rgdal::rawTransform(projection(obj), crs, nrow(xy), xy[, 1],  :
>>   Using PROJ not WKT2 strings
>> 3: In rgdal::rawTransform(projto_int, projfrom, nrow(xy), xy[, 1],  :
>>  
>>  Error in st_crs.character(comment(x)) : invalid crs: GEOGCRS["unknown",
>>     DATUM["World Geodetic System 1984",
>>         ELLIPSOID["WGS 84",6378137,298.257223563,
>>             LENGTHUNIT["metre",1]],
>>         ID["EPSG",6326]],
>>     PRIMEM["Greenwich",0,
>>         ANGLEUNIT["degree",0.0174532925199433],
>>         ID["EPSG",8901]],
>>     CS[ellipsoidal,2],
>>         AXIS["longitude",east,
>>             ORDER[1],
>>             ANGLEUNIT["degree",0.0174532925199433,
>>                 ID["EPSG",9122]]],
>>         AXIS["latitude",north,
>>             ORDER[2],
>>             ANGLEUNIT["degree",0.0174532925199433,
>>                 ID["EPSG",9122]]]]  
> 
> -Roy
> 
> 
>>
>> On Jun 12, 2020, at 7:20 AM, Roy Mendelssohn - NOAA Federal <roy.mendelssohn using noaa.gov> wrote:
>>
>> I will do the install sometime over the weekend,  and test what I have  (mainly the packages I have that use these).  Today is kind of tis up  (I mean I can do the install easily enough,  just no time to do any testing).
>>
>> Thanks,
>>
>> -Roy
>>
>>
>>> On Jun 12, 2020, at 7:17 AM, Roger Bivand <Roger.Bivand using nhh.no> wrote:
>>>
>>> On Fri, 12 Jun 2020, rmendelss gmail wrote:
>>>
>>>> Thank you for these efforts.  I imagine it will also make it easier to eventually have these on CRAN.
>>>>
>>>
>>> Do you have the possibility to try out the affected packages in your workflows to provide feedback? At the moment, user feedback can help guide the deployment of CRAN macOS R-spatial binaries.
>>>
>>> Roger
>>>
>>>> -Roy
>>>>
>>>>
>>>>> On Jun 12, 2020, at 7:11 AM, Prof Brian Ripley <ripley using stats.ox.ac.uk> wrote:
>>>>>
>>>>> I have put binary packages on CRANextras for lwgeom rgdal rgeos sf built with GEOS 3.8.1, GDAL 3.1.0, PROJ 6.3.2.
>>>>>
>>>>> Install with (e.g.)
>>>>>
>>>>> options(repos="https://www.stats.ox.ac.uk/pub/RWin")
>>>>> install.packages('rgdal', type = 'binary')
>>>>>
>>>>> (This needed a development version of the rgdal sources.)
>>>>>
>>>>> This is just to allow early access: it is planned to use these versions of the libs on the CRAN builders soon (but they do need package updates, e.g. for rgdal and proj4).
>>>>>
>>>>> These are all using static libraries to make these self-contained.
>>>>>
>>>>> (In case anyone is wondering why not PROJ 7 -- that would need unreleased changes to the PROJ and GDAL sources and changes to many CRAN packages.)
>>>>>
>>>>> --
>>>>> Brian D. Ripley,                  ripley using stats.ox.ac.uk
>>>>> Emeritus Professor of Applied Statistics, University of Oxford
>>>>>
>>>>> _______________________________________________
>>>>> R-SIG-Mac mailing list
>>>>> R-SIG-Mac using r-project.org
>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>
>>>>
>>>
>>> -- 
>>> Roger Bivand
>>> Department of Economics, Norwegian School of Economics,
>>> Helleveien 30, N-5045 Bergen, Norway.
>>> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
>>> https://orcid.org/0000-0003-2392-6140
>>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>
>> **********************
>> "The contents of this message do not reflect any position of the U.S. Government or NOAA."
>> **********************
>> Roy Mendelssohn
>> Supervisory Operations Research Analyst
>> NOAA/NMFS
>> Environmental Research Division
>> Southwest Fisheries Science Center
>> ***Note new street address***
>> 110 McAllister Way
>> Santa Cruz, CA 95060
>> Phone: (831)-420-3666
>> Fax: (831) 420-3980
>> e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/
>>
>> "Old age and treachery will overcome youth and skill."
>> "From those who have been given much, much will be expected" 
>> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>>
> 
> **********************
> "The contents of this message do not reflect any position of the U.S. Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/
> 
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected" 
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
> 

-- 
Edzer Pebesma
Institute for Geoinformatics
Heisenbergstrasse 2, 48149 Muenster, Germany
Phone: +49 251 8333081

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