[R-SIG-Mac] Installing the "jpeg" package?

[Spencer Graves]

On 2019-11-02 01:51, David Winsemius wrote:
>
> On 11/1/19 8:03 PM, Spencer Graves wrote:
>> Hello, All:
>>
>>
>>       How can I get the dev files for libjpeg installed under macOS 
>> 10.15.1 Catalina?
>
>
> You probably have the right tools, but it wouldn't hurt to check:
>
>
> https://cran.r-project.org/bin/macosx/tools/
>
>
> And have you installed the libjpeg library from the /libs/ directory?
>
>
> http://mac.r-project.org/libs/
>
> The directions for installation from a Terminal session are at the 
> bottom of the page.
>
> I have not updated to Catalina, but the error message suggested that 
> jpeglib.h could not be found.


       Thanks or the reply.  I tried to (re)install both the tools and 
libjpeg with apparent success.


       However, when I tried "install.packages()" again, I got the same 
error message as before.


       Other thoughts, e.g., diagnostic tests?


       Thanks again.
       Spencer Graves
>
>
> Hope this helps;
>
> David
>
>
>
>>
>>
>>       Simon Urbanek, the maintainer for the "jpeg" package, said I 
>> need them to install the "jpeg" package from sources.  I'm unable to 
>> get that package to install either as a binary or from sources;  see 
>> below.
>>
>>
>>       Suggestions?
>>       Thanks,
>>       Spencer Graves
>>
>>
>> > update.packages()
>> jpeg :
>>  Version 0.1-8 installed in 
>> /Library/Frameworks/R.framework/Versions/3.6/Resources/library
>>  Version 0.1-8.1 available at https://cran.rstudio.com
>> Update? (Yes/no/cancel) y
>>
>>   There is a binary version available but the
>>   source version is later:
>>      binary  source needs_compilation
>> jpeg  0.1-8 0.1-8.1              TRUE
>>
>> Do you want to install from sources the package which needs 
>> compilation? (Yes/no/cancel) y
>> installing the source package ‘jpeg’
>>
>> trying URL 'https://cran.rstudio.com/src/contrib/jpeg_0.1-8.1.tar.gz'
>> Content type 'application/x-gzip' length 18116 bytes (17 KB)
>> ==================================================
>> downloaded 17 KB
>>
>> * installing *source* package ‘jpeg’ ...
>> ** package ‘jpeg’ successfully unpacked and MD5 sums checked
>> ** using staged installation
>> ** libs
>> clang -I"/Library/Frameworks/R.framework/Resources/include" 
>> -DNDEBUG   -isysroot 
>> /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk 
>> -I/usr/local/include  -fPIC  -Wall -g -O2  -c read.c -o read.o
>> In file included from read.c:1:
>> ./rjcommon.h:11:10: fatal error: 'jpeglib.h' file not found
>> #include <jpeglib.h>
>>          ^~~~~~~~~~~
>> 1 error generated.
>> make: *** [read.o] Error 1
>> ERROR: compilation failed for package ‘jpeg’
>> * removing 
>> ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’
>> * restoring previous 
>> ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’
>>
>> The downloaded source packages are in
>> ‘/private/var/folders/mh/mrm_14nx19g13lsnj9zmvwjr0000gn/T/Rtmp8GMSE7/downloaded_packages’ 
>>
>> Warning message:
>> In install.packages(update[instlib == l, "Package"], l, repos = 
>> repos,  :
>>   installation of package ‘jpeg’ had non-zero exit status
>>
>> > update.packages()
>> jpeg :
>>  Version 0.1-8 installed in 
>> /Library/Frameworks/R.framework/Versions/3.6/Resources/library
>>  Version 0.1-8.1 available at https://cran.rstudio.com
>> Update? (Yes/no/cancel) y
>>
>>   There is a binary version available but the
>>   source version is later:
>>      binary  source needs_compilation
>> jpeg  0.1-8 0.1-8.1              TRUE
>>
>> Do you want to install from sources the package which needs 
>> compilation? (Yes/no/cancel) n
>> trying URL 
>> 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/jpeg_0.1-8.tgz'
>> Content type 'application/x-gzip' length 389601 bytes (380 KB)
>> ==================================================
>> downloaded 380 KB
>>
>>
>> The downloaded binary packages are in
>> /var/folders/mh/mrm_14nx19g13lsnj9zmvwjr0000gn/T//Rtmp8GMSE7/downloaded_packages 
>>
>>
>> > sessionInfo()
>> R version 3.6.1 (2019-07-05)
>> Platform: x86_64-apple-darwin15.6.0 (64-bit)
>> Running under: macOS Catalina 10.15.1
>>
>> Matrix products: default
>> BLAS: 
>> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
>> LAPACK: 
>> /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets
>> [6] methods   base
>>
>> other attached packages:
>> [1] bssm_0.1.8
>>
>> loaded via a namespace (and not attached):
>>  [1] Rcpp_1.0.2       lattice_0.20-38  assertthat_0.2.1
>>  [4] dplyr_0.8.3      crayon_1.3.4     R6_2.4.0
>>  [7] grid_3.6.1       gtable_0.3.0     magrittr_1.5
>> [10] coda_0.19-3      scales_1.0.0     ggplot2_3.2.1
>> [13] pillar_1.4.2     rlang_0.4.1      lazyeval_0.2.2
>> [16] rstudioapi_0.10  diagis_0.1.3-1   tools_3.6.1
>> [19] glue_1.3.1       purrr_0.3.3      munsell_0.5.0
>> [22] compiler_3.6.1   pkgconfig_2.0.3  colorspace_1.4-1
>> [25] tidyselect_0.2.5 gridExtra_2.3    tibble_2.1.3
>>
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