[R-SIG-Mac] R code chunks
Ivan Calandra
ivan.calandra at univ-reims.fr
Tue Apr 12 16:20:55 CEST 2016
Thanks a lot John.
I had tried, but only with the whole Editor window, not trying to
extract single tabs from the Editor window...!
Ok, I think I'll switch to RStudio then, but still, the Mac R Editor is
great ;)
Ivan
--
Ivan Calandra, PhD
University of Reims Champagne-Ardenne
GEGENAA - EA 3795
CREA - 2 esplanade Roland Garros
51100 Reims, France
+33(0)3 26 77 36 89
ivan.calandra at univ-reims.fr
--
https://www.researchgate.net/profile/Ivan_Calandra
https://publons.com/author/705639/
Le 12/04/2016 15:56, John Magnotti a écrit :
> Hi Ivan,
>
> The latest version of RStudio does allow for at least the Source
> Editor windows to be popped out of the main RStudio window. And you
> can create a new graphics device (dev.new()) which effectively pops
> the graph window out as well. I've found multiple sources windows +
> graph windows on one monitor and the rest of RStudio on another
> monitor is reasonably close to my workflow with R.app.
>
> take care,
>
> John
>
> On Tue, Apr 12, 2016 at 8:53 AM, Ivan Calandra
> <ivan.calandra at univ-reims.fr <mailto:ivan.calandra at univ-reims.fr>> wrote:
>
> Thank you Mollie and all,
>
> So it looks like there's no way to properly use chunks within the
> Mac R GUI.
> I will have to decide whether I completely switch to RStudio, or
> develop in the R GUI and then run in RStudio.
>
> Still, until now I was a great fan of the R GUI on Mac so I'm a
> bit frustrated. It would be great if this feature were integrated
> to the R GUI some day! Alternatively, a better GUI for RStudio
> allowing for multiple screens would be fine too (but that's for
> another list!).
>
> Bests,
> Ivan
>
> --
> Ivan Calandra, PhD
> University of Reims Champagne-Ardenne
> GEGENAA - EA 3795
> CREA - 2 esplanade Roland Garros
> 51100 Reims, France
> +33(0)3 26 77 36 89 <tel:%2B33%280%293%2026%2077%2036%2089>
> ivan.calandra at univ-reims.fr <mailto:ivan.calandra at univ-reims.fr>
> --
> https://www.researchgate.net/profile/Ivan_Calandra
> https://publons.com/author/705639/
>
> Le 12/04/2016 15:05, Mollie Brooks a écrit :
>
> Hi Ivan,
>
> Using the R GUI and the built-in editor, you should be able to
> format your document in the standard Rmarkdown or knitr way
> and save it with the appropriate extension (Rmd or Rnw), but
> only run lines within chunks in the console (using command +
> enter in the normal way). You can make sure all the chunks are
> working in that way. Then to format the whole document you can
> use a command in the Terminal as described in the links Tom
> sent or reopen the document in Rstudio.
>
> Somehow my R GUI can’t find the right pieces to make the pdf,
> so I have to use the Terminal. render("EstObsErr.Rmd")
> produces the error
> /usr/local/bin/pandoc EstObsErr.utf8.md
> <http://EstObsErr.utf8.md> --to latex --from
> markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures
> --output EstObsErr.pdf --template
> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/rmarkdown/rmd/latex/default-1.14.tex
> --highlight-style tango --latex-engine pdflatex --variable
> 'geometry:margin=1in'
> pandoc: pdflatex not found. pdflatex is needed for pdf output.
> Error: pandoc document conversion failed with error 41
>
> cheers,
> Mollie
>
> ------------------------
> Mollie Brooks, PhD
> Postdoctoral Researcher, Population Ecology Research Group
> Department of Evolutionary Biology & Environmental Studies,
> University of Zürich
> http://www.popecol.org/team/mollie-brooks/
>
> On 12Apr 2016, at 12:57, Ivan Calandra
> <ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>
> <mailto:ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>>> wrote:
>
> Thank you for your answer.
>
> I don't usually use the Terminal, so I'm not sure how to
> do it.
> But do you mean to start it from the Terminal and then use
> the R GUI or do everything in the Terminal? In the latter
> case, I would prefer using RStudio... My question was
> about using the R GUI Editor rather than RStudio.
>
> Ivan
>
> --
> Ivan Calandra, PhD
> University of Reims Champagne-Ardenne
> GEGENAA - EA 3795
> CREA - 2 esplanade Roland Garros
> 51100 Reims, France
> +33(0)3 26 77 36 89 <tel:%2B33%280%293%2026%2077%2036%2089>
> ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>
> <mailto:ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>>
> --
> https://www.researchgate.net/profile/Ivan_Calandra
> https://publons.com/author/705639/
>
> Le 12/04/2016 11:41, Tom Hopper a écrit :
>
> Ivan,
>
> You need to run knitr manually from the terminal
> (RStudio automates this with the “knit” button). See
>
> http://joshldavis.com/2014/04/12/beginners-tutorial-for-knitr/
> http://kbroman.org/knitr_knutshell/pages/Rmarkdown.html
>
> for short tutorials on using knitr from the terminal.
>
> Regards,
>
> Tom
>
> On 201604 12, at 05:15, Ivan Calandra
> <ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>
> <mailto:ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>>> wrote:
>
> Dear Mac useRs,
>
> A colleague of mine have introduced me to
> rmarkdown and knitr to produce nice reports. The
> other interesting thing here is to have so-called
> chunks of code, which I find very practical to
> organize scripts.
>
> I have found that it works well within RStudio.
> But is there a way to enable chunks within the R
> GUI (and its great editor)?
> What I don't like with RStudio (except that I need
> to install still another software, and place is
> limited on the 256GB SSD of my MacBook Air) is
> that it is not able to work on multiple screens.
>
> Thank you in advance for your help.
> Ivan
>
> --
> Ivan Calandra, PhD
> University of Reims Champagne-Ardenne
> GEGENAA - EA 3795
> CREA - 2 esplanade Roland Garros
> 51100 Reims, France
> +33(0)3 26 77 36 89
> <tel:%2B33%280%293%2026%2077%2036%2089>
> ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>
> <mailto:ivan.calandra at univ-reims.fr
> <mailto:ivan.calandra at univ-reims.fr>>
> --
> https://www.researchgate.net/profile/Ivan_Calandra
> https://publons.com/author/705639/
>
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