[R-SIG-Mac] R 3.1.3 install Mac OSX 10.9.5

[Colin A. Smith]

For what it’s worth, I saw the same problem a few days ago when I was compiling R trunk using OS X 10.10.2 and clang from the latest version of Xcode.

Cheers,

Colin

> On Mar 10, 2015, at 17:30, White Sky <bluebarbarossa at hotmail.com> wrote:
> 
> I've got a problem installing R 3.1.3 from source on Mac OSX 10.9.5 with gcc-4.9-bin.tar.gz
> 
> ./configure ends with:
>  R is now configured for x86_64-apple-darwin13.4.0
>   Source directory:          .
>   Installation directory:    /Library/Frameworks
>   C compiler:                gcc  -g -O2
>   Fortran 77 compiler:       gfortran  -g -O2
>   C++ compiler:              g++  -g -O2
>   C++ 11 compiler:           g++  -std=c++11 -g -O2
>   Fortran 90/95 compiler:    gfortran -g -O2
>   Obj-C compiler:	    gcc -g -O2 -fobjc-exceptions
>   Interfaces supported:      X11, aqua, tcltk
>   External libraries:        readline
>   Additional capabilities:   NLS, ICU
>   Options enabled:           framework, shared BLAS, R profiling
>   Capabilities skipped:      PNG, JPEG, TIFF, cairo
>   Options not enabled:       memory profiling
>   Recommended packages:      yes
> 
> ... although also there is a warning during configure
> configure: WARNING: X11/Intrinsic.h: accepted by the compiler, rejected by the preprocessor!
> configure: WARNING: X11/Intrinsic.h: proceeding with the compiler's result
> 
> 
> 'make' generates a lot of time-zone warnings, and ends in Done.
> 
> 
> 'make check' ends with time-zone related errors.
> < Warning messages:
> < 1: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
> <   unknown timezone 'Europe/London'
> < 2: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
> <   unknown timezone 'GMT'
> < 3: In strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
> <   unknown timezone 'America/New_York'
> make[3]: *** [simple-true.Rout] Error 1
> make[2]: *** [test-Specific] Error 2
> make[1]: *** [test-all-basics] Error 1
> make: *** [check] Error 2
> 
> 
> 'make install' returns
> 
> make[1]: Nothing to be done for `install'.
> make[1]: Nothing to be done for `install'.
> installing doc ...
> installing doc/html ...
> installing doc/manual ...
> installing etc ...
> installing share ...
> chmod: Unable to change file mode on /Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R: Operation not permitted
> make[2]: *** [install] Error 1
> make[1]: *** [install] Error 1
> make: *** [install] Error 1
> 
> 
> I've tried ./configure --without-internal-tzcode ...and it doesn't make much difference.
> 
> I've checked my /usr/share/zoneinfo/ all looks normal I guess.
> 
> I'm thinking the problem might be related to gfortran, Xcode (updated recently), or permissions. The time-zone issue might be a result rather than a cause. Any advice would be greatly appreciated. 		 	   		  
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