[R-SIG-Mac] loading tkrplot causes a segfault

[Dan Tenenbaum]

----- Original Message -----
> From: "THIOULOUSE JEAN" <Jean.Thioulouse at univ-lyon1.fr>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: "r-sig-mac" <r-sig-mac at r-project.org>
> Sent: Friday, July 10, 2015 9:53:18 PM
> Subject: Re: [R-SIG-Mac] loading tkrplot causes a segfault
> 
> 
> Re-install X11 XQuartz (I think that this is in the FAQ).
> 

Reinstalling XQuartz (and rebooting) had no effect. Any other ideas?

Thanks,
Dan


> Jean
> 
> 
> > Le 11 juil. 2015 à 00:54, Dan Tenenbaum <dtenenba at fredhutch.org> a
> > écrit :
> > 
> > Hi,
> > 
> > loading the tkrplot package (version 0.0-23) causes a segfault.
> > This only seems to happen on Mavericks, not Snow Leopard, Linux,
> > or Windows.
> > 
> >> library(tkrplot)
> > Loading required package: tcltk
> > 
> > *** caught segfault ***
> > address 0x998, cause 'memory not mapped'
> > 
> > Traceback:
> > 1: structure(.External(.C_dotTclObjv, objv), class = "tclObj")
> > 2: .Tcl.objv(.Tcl.args.objv(...))
> > 3: tcl("load", file, "Rplot")
> > 4: doTryCatch(return(expr), name, parentenv, handler)
> > 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> > 6: tryCatchList(expr, classes, parentenv, handlers)
> > 7: tryCatch(tcl("load", file, "Rplot"), error = function(e)
> > warning("loading Rplot failed",     call. = FALSE))
> > 8: fun(libname, pkgname)
> > 9: doTryCatch(return(expr), name, parentenv, handler)
> > 10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> > 11: tryCatchList(expr, classes, parentenv, handlers)
> > 12: tryCatch(fun(libname, pkgname), error = identity)
> > 13: runHook(".onLoad", env, package.lib, package)
> > 14: loadNamespace(package, c(which.lib.loc, lib.loc))
> > 15: doTryCatch(return(expr), name, parentenv, handler)
> > 16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> > 17: tryCatchList(expr, classes, parentenv, handlers)
> > 18: tryCatch(expr, error = function(e) {    call <-
> > conditionCall(e)    if (!is.null(call)) {        if
> > (identical(call[[1L]], quote(doTryCatch)))             call <-
> > sys.call(-4L)        dcall <- deparse(call)[1L]        prefix <-
> > paste("Error in", dcall, ": ")        LONG <- 75L        msg <-
> > conditionMessage(e)        sm <- strsplit(msg, "\n")[[1L]]
> >        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type =
> > "w")        if (is.na(w))             w <- 14L + nchar(dcall, type
> > = "b") + nchar(sm[1L],                 type = "b")        if (w >
> > LONG)             prefix <- paste0(prefix, "\n  ")    }    else
> > prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e),
> > "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent &&
> > identical(getOption("show.error.messages"),         TRUE)) {
> >        cat(msg, file = stderr())
> >        .Internal(printDeferredWarnings())    }
> >    invisible(structure(msg, class = "try-error", condition = e))})
> > 19: try({    ns <- loadNamespace(package, c(which.lib.loc,
> > lib.loc))    env <- attachNamespace(ns, pos = pos, deps)})
> > 20: library(tkrplot)
> > 
> > Possible actions:
> > 1: abort (with core dump, if enabled)
> > 2: normal R exit
> > 3: exit R without saving workspace
> > 4: exit R saving workspace
> > 
> > 
> > 
> > My sessionInfo() is:
> > 
> >> sessionInfo()
> > R version 3.2.1 (2015-06-18)
> > Platform: x86_64-apple-darwin13.4.0 (64-bit)
> > Running under: OS X 10.9.5 (Mavericks)
> > 
> > locale:
> > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> > 
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods
> >   base
> > 
> > 
> > Any ideas?
> > 
> > Thanks,
> > Dan
> > 
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac at r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 
>