[R-SIG-Mac] R 3.2.2 install problems under OS X 10.10.3

[Simon Urbanek]

Spencer,

use

open -a R

in Terminal or use Spotlight to look for R (the application) - you have probably moved it someplace non-default and unfortunately Apple's Installer is doing a really good job in upgrading the R.app that you have assigned last and apparently it's not the one in Applications.

Cheers,
Simon


On Aug 18, 2015, at 9:20 PM, Spencer Graves <spencer.graves at prodsyse.com> wrote:

> Hi, Peter:
> 
> 
> On 8/18/2015 4:25 AM, peter dalgaard wrote:
>> On 18 Aug 2015, at 02:54 , Spencer Graves<spencer.graves at prodsyse.com>  wrote:
>> 
>>> Hello:
>>> 
>>> 
>>>      After upgrading from R 3.2.1 to 3.2.2 under OS X 10.10.3, attempts to start the default R GUI fail with, "Problem Report for R:  R cannot be opened because of a problem."  "Problem Details and System Configuration" are copied below.  (R 3.2.2 seems to work fine within RStudio 0.98.1103.)
>>> 
>>> 
>>>      What do you suggest I do to fix this problem?
>>> 
>> Dunno, it works fine for me, at least on Mavericks 10.9.5.
>> 
>> However, the reference to Library/Frameworks/R.framework/Versions/3.1/... makes me suspect that you are somehow mixing versions. Perhaps clean up and reinstall?
> 
> 
>      Thanks.  Now I can't find a way to start R at all outside of RStudio after uninstalling and reinstalling.
> 
> 
>      What do you suggest I try next?
> 
> 
>      Thanks,
>      Spencer
> 
> 
> p.s.  To be precise, I ran the following as described in "4.2 Uninstalling under OS X" in "R Installation and Administration":
> 
> 
>            ..$ sudo rm -rf /Library/Frameworks/R.framework
>            ..$ sudo rm -rf /Applications/R.app
>            ..$ sudo rm -rf /usr/bin/R
>            ..$ sudo rm -rf /usr/bin/Rscript
> 
> 
>      Then I double-clicked on "R-3.2.2.pkg" in Downloads.  R seemed to install, and R 3.2.2 started as expected under RStudio, but I couldn't find stand-alone R icons.  So I upgraded to 10.10.5 and double-clicked again on "R-3.2.2.pkg".  That didn't help.  FYI, from within RStudio, I get the following:
> 
> 
> > sessionInfo()
> R version 3.2.2 (2015-08-14)
> Platform: x86_64-apple-darwin13.4.0 (64-bit)
> Running under: OS X 10.10.5 (Yosemite)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods base
> 
> loaded via a namespace (and not attached):
> [1] tools_3.2.2
> 
>> -pd
>> 
>> 
>>>      Thanks,
>>>      Spencer Graves
>>> 
>>> 
>>> Problem Details and System Configuration
>>> 
>>> 
>>> Process:               R [569]
>>> Path:                  /Applications/R.app/Contents/MacOS/R
>>> Identifier:            org.R-project.R
>>> Version:               ???
>>> Code Type:             X86-64 (Native)
>>> Parent Process:        ??? [1]
>>> Responsible:           R [569]
>>> User ID:               501
>>> 
>>> Date/Time:             2015-08-17 19:46:47.942 -0500
>>> OS Version:            Mac OS X 10.10.3 (14D136)
>>> Report Version:        11
>>> Anonymous UUID:        6621BCEA-EA0C-3D7A-AE0A-BFCE63A9A8B4
>>> 
>>> Sleep/Wake UUID:       9C8F92EE-E940-4B17-A64C-C0F470DFE449
>>> 
>>> Time Awake Since Boot: 2600 seconds
>>> Time Since Wake:       700 seconds
>>> 
>>> Crashed Thread:        0
>>> 
>>> Exception Type:        EXC_BREAKPOINT (SIGTRAP)
>>> Exception Codes:       0x0000000000000002, 0x0000000000000000
>>> 
>>> Application Specific Information:
>>> dyld: launch, loading dependent libraries
>>> 
>>> Dyld Error Message:
>>>  Library not loaded: /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
>>>  Referenced from: /Applications/R.app/Contents/MacOS/R
>>>  Reason: image not found
>>> 
>>> Binary Images:
>>>    0x7fff6b9f0000 -     0x7fff6ba26837  dyld (353.2.1) <65DCCB06-339C-3E25-9702-600A28291D0E> /usr/lib/dyld
>>> 
>>> Model: MacBookPro11,3, BootROM MBP112.0138.B14, 4 processors, Intel Core i7, 2.8 GHz, 16 GB, SMC 2.19f12
>>> Graphics: Intel Iris Pro, Intel Iris Pro, Built-In
>>> Graphics: NVIDIA GeForce GT 750M, NVIDIA GeForce GT 750M, PCIe, 2048 MB
>>> Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
>>> Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
>>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x134), Broadcom BCM43xx 1.0 (7.15.166.24.3)
>>> Bluetooth: Version 4.3.4f4 15601, 3 services, 27 devices, 1 incoming serial ports
>>> Network Service: Wi-Fi, AirPort, en0
>>> Serial ATA Device: APPLE SSD SM1024F, 1 TB
>>> USB Device: Internal Memory Card Reader
>>> USB Device: BRCM20702 Hub
>>> USB Device: Bluetooth USB Host Controller
>>> USB Device: Apple Internal Keyboard / Trackpad
>>> Thunderbolt Bus: MacBook Pro, Apple Inc., 17.1
>>> 
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