[R-SIG-Mac] R 3.2.2 install problems under OS X 10.10.3

[Spencer Graves]

Hi, Peter:


On 8/18/2015 4:25 AM, peter dalgaard wrote:
> On 18 Aug 2015, at 02:54 , Spencer Graves<spencer.graves at prodsyse.com>  wrote:
>
>> Hello:
>>
>>
>>       After upgrading from R 3.2.1 to 3.2.2 under OS X 10.10.3, attempts to start the default R GUI fail with, "Problem Report for R:  R cannot be opened because of a problem."  "Problem Details and System Configuration" are copied below.  (R 3.2.2 seems to work fine within RStudio 0.98.1103.)
>>
>>
>>       What do you suggest I do to fix this problem?
>>
> Dunno, it works fine for me, at least on Mavericks 10.9.5.
>
> However, the reference to Library/Frameworks/R.framework/Versions/3.1/... makes me suspect that you are somehow mixing versions. Perhaps clean up and reinstall?


       Thanks.  Now I can't find a way to start R at all outside of 
RStudio after uninstalling and reinstalling.


       What do you suggest I try next?


       Thanks,
       Spencer


p.s.  To be precise, I ran the following as described in "4.2 
Uninstalling under OS X" in "R Installation and Administration":


             ..$ sudo rm -rf /Library/Frameworks/R.framework
             ..$ sudo rm -rf /Applications/R.app
             ..$ sudo rm -rf /usr/bin/R
             ..$ sudo rm -rf /usr/bin/Rscript


       Then I double-clicked on "R-3.2.2.pkg" in Downloads.  R seemed to 
install, and R 3.2.2 started as expected under RStudio, but I couldn't 
find stand-alone R icons.  So I upgraded to 10.10.5 and double-clicked 
again on "R-3.2.2.pkg".  That didn't help.  FYI, from within RStudio, I 
get the following:


 > sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.5 (Yosemite)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods base

loaded via a namespace (and not attached):
[1] tools_3.2.2

> -pd
>
>
>>       Thanks,
>>       Spencer Graves
>>
>>
>> Problem Details and System Configuration
>>
>>
>> Process:               R [569]
>> Path:                  /Applications/R.app/Contents/MacOS/R
>> Identifier:            org.R-project.R
>> Version:               ???
>> Code Type:             X86-64 (Native)
>> Parent Process:        ??? [1]
>> Responsible:           R [569]
>> User ID:               501
>>
>> Date/Time:             2015-08-17 19:46:47.942 -0500
>> OS Version:            Mac OS X 10.10.3 (14D136)
>> Report Version:        11
>> Anonymous UUID:        6621BCEA-EA0C-3D7A-AE0A-BFCE63A9A8B4
>>
>> Sleep/Wake UUID:       9C8F92EE-E940-4B17-A64C-C0F470DFE449
>>
>> Time Awake Since Boot: 2600 seconds
>> Time Since Wake:       700 seconds
>>
>> Crashed Thread:        0
>>
>> Exception Type:        EXC_BREAKPOINT (SIGTRAP)
>> Exception Codes:       0x0000000000000002, 0x0000000000000000
>>
>> Application Specific Information:
>> dyld: launch, loading dependent libraries
>>
>> Dyld Error Message:
>>   Library not loaded: /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
>>   Referenced from: /Applications/R.app/Contents/MacOS/R
>>   Reason: image not found
>>
>> Binary Images:
>>     0x7fff6b9f0000 -     0x7fff6ba26837  dyld (353.2.1) <65DCCB06-339C-3E25-9702-600A28291D0E> /usr/lib/dyld
>>
>> Model: MacBookPro11,3, BootROM MBP112.0138.B14, 4 processors, Intel Core i7, 2.8 GHz, 16 GB, SMC 2.19f12
>> Graphics: Intel Iris Pro, Intel Iris Pro, Built-In
>> Graphics: NVIDIA GeForce GT 750M, NVIDIA GeForce GT 750M, PCIe, 2048 MB
>> Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
>> Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x484D54343147533641465238412D50422020
>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x134), Broadcom BCM43xx 1.0 (7.15.166.24.3)
>> Bluetooth: Version 4.3.4f4 15601, 3 services, 27 devices, 1 incoming serial ports
>> Network Service: Wi-Fi, AirPort, en0
>> Serial ATA Device: APPLE SSD SM1024F, 1 TB
>> USB Device: Internal Memory Card Reader
>> USB Device: BRCM20702 Hub
>> USB Device: Bluetooth USB Host Controller
>> USB Device: Apple Internal Keyboard / Trackpad
>> Thunderbolt Bus: MacBook Pro, Apple Inc., 17.1
>>
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