[R-SIG-Mac] R GUI is freezing
Christopher Swan
cmswan at umbc.edu
Sat Apr 4 16:17:58 CEST 2015
R GUI is freezing and I must force quit the vast majority of the time it accesses “Choose File”. This can be via File/Open Document, Misc/Choose Working Directory or file.choose(). read.csv(), stewed(), etc work fine.
I am running OS X Yosemite (10.10.1), R 3.1.3 GUI 1.65 Mavericks build (6913)
Below is the first page or so of crash report -
This is pretty distracting. I have searched and searched for a solution. I see a few posts online with folks reporting similar problems, but with no solutions.
Apologies in advance if I am not providing all of the information needed.
Many thanks for any help you can lend -
Regards, Chris
---
Christopher M. Swan, Ph.D.
Associate Professor
Dept. of Geography & Environmental Systems
University of Maryland, Baltimore County
211 Sondheim Hall
1000 Hilltop Circle
Baltimore, MD 21250 USA
http://biodiversity.umbc.edu <http://biodiversity.umbc.edu/>
http://orcid.org/0000-0002-9763-9630 <http://orcid.org/0000-0002-9763-9630>
http://scholar.google.com/citations?user=NNfHt5YAAAAJ <http://scholar.google.com/citations?user=NNfHt5YAAAAJ>
1.410.455.3957
Date/Time: 2015-04-02 11:35:30 -0400
OS Version: 10.10.1 (Build 14B25)
Architecture: x86_64
Report Version: 21
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Version: R 3.1.3 GUI 1.65 Mavericks build (6913)
Parent: launchd [1]
PID: 26950
Event: hang
Duration: 8.10s (process was unresponsive for 12 seconds before sampling)
Steps: 82 (100ms sampling interval)
Hardware model: MacBookAir5,2
Active cpus: 4
Fan speed: 2001 rpm
--------------------------------------------------
Timeline format: stacks are sorted chronologically
Use -i and -heavy to re-report with count sorting
--------------------------------------------------
Heaviest stack for the main thread of the target process:
82 start + 1 (libdyld.dylib + 13769) [0x7fff969645c9]
82 main + 815 (R + 6879) [0x106a28adf]
82 -[REngine runREPL] + 138 (R + 76586) [0x106a39b2a]
82 run_REngineRmainloop + 295 (R + 124759) [0x106a45757]
82 ??? (<FCD13E53-7DBA-39F8-A06B-D51A0834EBD6> + 899711) [0x106c10a7f]
82 Re_ReadConsole + 185 (R + 66441) [0x106a37389]
82 -[RController handleReadConsole:] + 186 (R + 27322) [0x106a2daba]
82 -[RController doProcessEvents:] + 204 (R + 50860) [0x106a336ac]
82 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 194 (AppKit + 147072) [0x7fff87cd3e80]
82 _DPSNextEvent + 1843 (AppKit + 150080) [0x7fff87cd4a40]
82 _NSHandleCarbonMenuEvent + 277 (AppKit + 1608990) [0x7fff87e38d1e]
82 _HandleMenuSelection2 + 446 (HIToolbox + 574622) [0x7fff94a8e49e]
82 MenuSelectCore(MenuData*, Point, double, unsigned int, OpaqueMenuRef**, unsigned short*) + 702 (HIToolbox + 575665) [0x7fff94a8e8b1]
82 FinishMenuSelection(SelectionData*, MenuResult*, MenuResult*) + 96 (HIToolbox + 544006) [0x7fff94a86d06]
82 SendMenuItemSelectedEvent + 188 (HIToolbox + 544308) [0x7fff94a86e34]
82 SendMenuCommandWithContextAndModifiers + 59 (HIToolbox + 544397) [0x7fff94a86e8d]
82 SendHICommandEvent(unsigned int, HICommand const*, unsigned int, unsigned int, unsigned char, void const*, OpaqueEventTargetRef*, OpaqueEventTargetRef*, OpaqueEventRef**) + 428 (HIToolbox + 333717) [0x7fff94a53795]
82 SendEventToEventTarget + 40 (HIToolbox + 115334) [0x7fff94a1e286]
82 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 386 (HIToolbox + 30574) [0x7fff94a0976e]
82 DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1260 (HIToolbox + 33580) [0x7fff94a0a32c]
82 NSSLMMenuEventHandler + 724 (AppKit + 2109163) [0x7fff87eb2eeb]
82 -[NSCarbonMenuImpl _carbonCommandProcessEvent:handlerCallRef:] + 107 (AppKit + 2468178) [0x7fff87f0a952]
82 -[NSMenu _internalPerformActionForItemAtIndex:] + 35 (AppKit + 2468614) [0x7fff87f0ab06]
82 -[NSMenu performActionForItemAtIndex:] + 131 (AppKit + 2468758) [0x7fff87f0ab96]
82 _os_activity_initiate + 75 (libsystem_trace.dylib + 3287) [0x7fff95334cd7]
82 -[NSCarbonMenuImpl performActionWithHighlightingForItemAtIndex:] + 114 (AppKit + 2151159) [0x7fff87ebd2f7]
82 -[NSMenuItem _corePerformAction] + 382 (AppKit + 2151898) [0x7fff87ebd5da]
82 -[NSApplication sendAction:to:from:] + 410 (AppKit + 2045079) [0x7fff87ea3497]
82 _os_activity_initiate + 75 (libsystem_trace.dylib + 3287) [0x7fff95334cd7]
82 -[RController setWorkingDir:] + 202 (R + 57994) [0x106a3528a]
82 -[NSSavePanel runModal] + 282 (AppKit + 6111181) [0x7fff88283fcd]
82 -[NSApplication runModalForWindow:] + 119 (AppKit + 3305862) [0x7fff87fd7186]
82 -[NSApplication _realDoModalLoop:peek:] + 666 (AppKit + 3312599) [0x7fff87fd8bd7]
82 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 194 (AppKit + 147072) [0x7fff87cd3e80]
82 _DPSNextEvent + 964 (AppKit + 149201) [0x7fff87cd46d1]
82 _BlockUntilNextEventMatchingListInModeWithFilter + 71 (HIToolbox + 188411) [0x7fff94a2fffb]
82 ReceiveNextEventCommon + 179 (HIToolbox + 188606) [0x7fff94a300be]
82 RunCurrentEventLoopInMode + 235 (HIToolbox + 189503) [0x7fff94a3043f]
82 CFRunLoopRunSpecific + 296 (CoreFoundation + 464952) [0x7fff8d049838]
82 __CFRunLoopRun + 872 (CoreFoundation + 466408) [0x7fff8d049de8]
82 __CFRunLoopDoObservers + 368 (CoreFoundation + 523488) [0x7fff8d057ce0]
82 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 (CoreFoundation + 523655) [0x7fff8d057d87]
82 __38-[NSApplication setWindowsNeedUpdate:]_block_invoke2508 + 76 (AppKit + 3556895) [0x7fff8801461f]
82 -[NSApplication updateWindows] + 86 (AppKit + 160649) [0x7fff87cd7389]
82 +[NSTextInputContext currentInputContext] + 140 (AppKit + 162532) [0x7fff87cd7ae4]
82 -[FI_TListView inputContext] + 29 (FinderKit + 1312876) [0x7fff956e286c]
82 +[FI_TFloatingInputWindowController singleton] + 80 (FinderKit + 664266) [0x7fff956442ca]
82 -[FI_TFloatingInputWindow init] + 668 (FinderKit + 665781) [0x7fff956448b5]
82 -[NSWindow _setFrameCommon:display:stashSize:] + 2801 (AppKit + 1132460) [0x7fff87dc47ac]
82 -[NSNotificationCenter postNotificationName:object:userInfo:] + 66 (Foundation + 11937) [0x7fff8f1ebea1]
82 _CFXNotificationPost + 3140 (CoreFoundation + 65972) [0x7fff8cfe81b4]
82 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12 (CoreFoundation + 1174716) [0x7fff8d0f6cbc]
82 -[RDocumentWinCtrl setStatusLineText:] + 430 (R + 209966) [0x106a5a42e]
82 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 278 (Foundation + 436921) [0x7fff8f253ab9]
82 CFRunLoopRunSpecific + 296 (CoreFoundation + 464952) [0x7fff8d049838]
82 __CFRunLoopRun + 872 (CoreFoundation + 466408) [0x7fff8d049de8]
82 __CFRunLoopDoObservers + 368 (CoreFoundation + 523488) [0x7fff8d057ce0]
82 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 (CoreFoundation + 523655) [0x7fff8d057d87]
82 ___NSPostActiveFirstResponderChanged_block_invoke + 29 (AppKit + 1585278) [0x7fff87e3307e]
82 +[_NSAutomaticFocusRing setActiveFirstResponderChanged] + 37 (AppKit + 1585431) [0x7fff87e33117]
82 +[NSTextInputContext currentInputContext] + 140 (AppKit + 162532) [0x7fff87cd7ae4]
82 -[FI_TListView inputContext] + 29 (FinderKit + 1312876) [0x7fff956e286c]
82 +[FI_TFloatingInputWindowController singleton] + 28 (FinderKit + 664214) [0x7fff95644296]
82 __psynch_mutexwait + 10 (libsystem_kernel.dylib + 90466) [0x7fff88fe9162]
*82 psynch_mtxcontinue + 0 (pthread + 22095) [0xffffff7f80efa64f]
Process: R [26950]
Path: /Applications/R.app/Contents/MacOS/R
Architecture: x86_64
Parent: launchd [1]
UID: 501
Task size: 28701 pages (-4)
CPU Time: 0.034s
Note: Unresponsive for 12 seconds before sampling
Note: 2 idle work queue threads omitted
Thread 0xdc8a8f DispatchQueue 1 82 samples (1-82) priority 47
<frontmost, thread QoS user interactive, boosted, received importance donation from WindowServer [111], IO policy important>
82 start + 1 (libdyld.dylib + 13769) [0x7fff969645c9] 1-82
82 main + 815 (R + 6879) [0x106a28adf] 1-82
82 -[REngine runREPL] + 138 (R + 76586) [0x106a39b2a] 1-82
82 run_REngineRmainloop + 295 (R + 124759) [0x106a45757] 1-82
82 ??? (<FCD13E53-7DBA-39F8-A06B-D51A0834EBD6> + 899711) [0x106c10a7f] 1-82
82 Re_ReadConsole + 185 (R + 66441) [0x106a37389] 1-82
82 -[RController handleReadConsole:] + 186 (R + 27322) [0x106a2daba] 1-82
82 -[RController doProcessEvents:] + 204 (R + 50860) [0x106a336ac] 1-82
82 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 194 (AppKit + 147072) [0x7fff87cd3e80] 1-82
82 _DPSNextEvent + 1843 (AppKit + 150080) [0x7fff87cd4a40] 1-82
82 _NSHandleCarbonMenuEvent + 277 (AppKit + 1608990) [0x7fff87e38d1e] 1-82
82 _HandleMenuSelection2 + 446 (HIToolbox + 574622) [0x7fff94a8e49e] 1-82
82 MenuSelectCore(MenuData*, Point, double, unsigned int, OpaqueMenuRef**, unsigned short*) + 702 (HIToolbox + 575665) [0x7fff94a8e8b1] 1-82
82 FinishMenuSelection(SelectionData*, MenuResult*, MenuResult*) + 96 (HIToolbox + 544006) [0x7fff94a86d06] 1-82
82 SendMenuItemSelectedEvent + 188 (HIToolbox + 544308) [0x7fff94a86e34] 1-82
82 SendMenuCommandWithContextAndModifiers + 59 (HIToolbox + 544397) [0x7fff94a86e8d] 1-82
82 SendHICommandEvent(unsigned int, HICommand const*, unsigned int, unsigned int, unsigned char, void const*, OpaqueEventTargetRef*, OpaqueEventTargetRef*, OpaqueEventRef**) + 428 (HIToolbox + 333717) [0x7fff94a53795] 1-82
82 SendEventToEventTarget + 40 (HIToolbox + 115334) [0x7fff94a1e286] 1-82
82 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 386 (HIToolbox + 30574) [0x7fff94a0976e] 1-82
82 DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1260 (HIToolbox + 33580) [0x7fff94a0a32c] 1-82
82 NSSLMMenuEventHandler + 724 (AppKit + 2109163) [0x7fff87eb2eeb] 1-82
82 -[NSCarbonMenuImpl _carbonCommandProcessEvent:handlerCallRef:] + 107 (AppKit + 2468178) [0x7fff87f0a952] 1-82
82 -[NSMenu _internalPerformActionForItemAtIndex:] + 35 (AppKit + 2468614) [0x7fff87f0ab06] 1-82
82 -[NSMenu performActionForItemAtIndex:] + 131 (AppKit + 2468758) [0x7fff87f0ab96] 1-82
82 _os_activity_initiate + 75 (libsystem_trace.dylib + 3287) [0x7fff95334cd7] 1-82
82 -[NSCarbonMenuImpl performActionWithHighlightingForItemAtIndex:] + 114 (AppKit + 2151159) [0x7fff87ebd2f7] 1-82
82 -[NSMenuItem _corePerformAction] + 382 (AppKit + 2151898) [0x7fff87ebd5da] 1-82
82 -[NSApplication sendAction:to:from:] + 410 (AppKit + 2045079) [0x7fff87ea3497] 1-82
82 _os_activity_initiate + 75 (libsystem_trace.dylib + 3287) [0x7fff95334cd7] 1-82
82 -[RController setWorkingDir:] + 202 (R + 57994) [0x106a3528a] 1-82
82 -[NSSavePanel runModal] + 282 (AppKit + 6111181) [0x7fff88283fcd] 1-82
82 -[NSApplication runModalForWindow:] + 119 (AppKit + 3305862) [0x7fff87fd7186] 1-82
82 -[NSApplication _realDoModalLoop:peek:] + 666 (AppKit + 3312599) [0x7fff87fd8bd7] 1-82
82 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 194 (AppKit + 147072) [0x7fff87cd3e80] 1-82
82 _DPSNextEvent + 964 (AppKit + 149201) [0x7fff87cd46d1] 1-82
82 _BlockUntilNextEventMatchingListInModeWithFilter + 71 (HIToolbox + 188411) [0x7fff94a2fffb] 1-82
82 ReceiveNextEventCommon + 179 (HIToolbox + 188606) [0x7fff94a300be] 1-82
82 RunCurrentEventLoopInMode + 235 (HIToolbox + 189503) [0x7fff94a3043f] 1-82
82 CFRunLoopRunSpecific + 296 (CoreFoundation + 464952) [0x7fff8d049838] 1-82
82 __CFRunLoopRun + 872 (CoreFoundation + 466408) [0x7fff8d049de8] 1-82
82 __CFRunLoopDoObservers + 368 (CoreFoundation + 523488) [0x7fff8d057ce0] 1-82
82 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 (CoreFoundation + 523655) [0x7fff8d057d87] 1-82
82 __38-[NSApplication setWindowsNeedUpdate:]_block_invoke2508 + 76 (AppKit + 3556895) [0x7fff8801461f] 1-82
82 -[NSApplication updateWindows] + 86 (AppKit + 160649) [0x7fff87cd7389] 1-82
82 +[NSTextInputContext currentInputContext] + 140 (AppKit + 162532) [0x7fff87cd7ae4] 1-82
82 -[FI_TListView inputContext] + 29 (FinderKit + 1312876) [0x7fff956e286c] 1-82
82 +[FI_TFloatingInputWindowController singleton] + 80 (FinderKit + 664266) [0x7fff956442ca] 1-82
82 -[FI_TFloatingInputWindow init] + 668 (FinderKit + 665781) [0x7fff956448b5] 1-82
82 -[NSWindow _setFrameCommon:display:stashSize:] + 2801 (AppKit + 1132460) [0x7fff87dc47ac] 1-82
82 -[NSNotificationCenter postNotificationName:object:userInfo:] + 66 (Foundation + 11937) [0x7fff8f1ebea1] 1-82
82 _CFXNotificationPost + 3140 (CoreFoundation + 65972) [0x7fff8cfe81b4] 1-82
82 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12 (CoreFoundation + 1174716) [0x7fff8d0f6cbc] 1-82
82 -[RDocumentWinCtrl setStatusLineText:] + 430 (R + 209966) [0x106a5a42e] 1-82
82 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 278 (Foundation + 436921) [0x7fff8f253ab9] 1-82
82 CFRunLoopRunSpecific + 296 (CoreFoundation + 464952) [0x7fff8d049838] 1-82
82 __CFRunLoopRun + 872 (CoreFoundation + 466408) [0x7fff8d049de8] 1-82
82 __CFRunLoopDoObservers + 368 (CoreFoundation + 523488) [0x7fff8d057ce0] 1-82
82 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23 (CoreFoundation + 523655) [0x7fff8d057d87] 1-82
82 ___NSPostActiveFirstResponderChanged_block_invoke + 29 (AppKit + 1585278) [0x7fff87e3307e] 1-82
82 +[_NSAutomaticFocusRing setActiveFirstResponderChanged] + 37 (AppKit + 1585431) [0x7fff87e33117] 1-82
82 +[NSTextInputContext currentInputContext] + 140 (AppKit + 162532) [0x7fff87cd7ae4] 1-82
82 -[FI_TListView inputContext] + 29 (FinderKit + 1312876) [0x7fff956e286c] 1-82
82 +[FI_TFloatingInputWindowController singleton] + 28 (FinderKit + 664214) [0x7fff95644296] 1-82
82 __psynch_mutexwait + 10 (libsystem_kernel.dylib + 90466) [0x7fff88fe9162] 1-82
*82 psynch_mtxcontinue + 0 (pthread + 22095) [0xffffff7f80efa64f] 1-82
Thread 0xdc8a9f DispatchQueue 2 82 samples (1-82) priority 47
<frontmost, thread QoS user interactive, boosted, received importance donation from WindowServer [111], IO policy important>
82 _dispatch_mgr_thread + 52 (libdispatch.dylib + 19050) [0x7fff93aa5a6a] 1-82
82 kevent64 + 10 (libsystem_kernel.dylib + 94766) [0x7fff88fea22e] 1-82
*82 ??? (kernel + 6000416) [0xffffff80007b8f20] 1-82
Thread 0xdc9552 DispatchQueue 1880 82 samples (1-82) priority 47 cpu time 0.030s
<frontmost, thread QoS user interactive, boosted, received importance donation from WindowServer [111], IO policy important>
82 start_wqthread + 13 (libsystem_pthread.dylib + 5281) [0x7fff952b54a1] 1-82
82 _pthread_wqthread + 729 (libsystem_pthread.dylib + 14027) [0x7fff952b76cb] 1-82
82 _dispatch_worker_thread3 + 91 (libdispatch.dylib + 77796) [0x7fff93ab3fe4] 1-82
82 _dispatch_root_queue_drain + 463 (libdispatch.dylib + 18103) [0x7fff93aa56b7] 1-82
82 _dispatch_queue_invoke + 202 (libdispatch.dylib + 28364) [0x7fff93aa7ecc] 1-82
82 _dispatch_queue_drain + 1100 (libdispatch.dylib + 21349) [0x7fff93aa6365] 1-82
82 _dispatch_client_callout + 8 (libdispatch.dylib + 7187) [0x7fff93aa2c13] 1-82
82 _dispatch_call_block_and_release + 12 (libdispatch.dylib + 25379) [0x7fff93aa7323] 1-82
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