[R-SIG-Mac] Segfault Error in GUI version of R

Prof Brian Ripley ripley at stats.ox.ac.uk
Mon Jan 13 09:28:32 CET 2014


The version of R.app you are using (built for OS X 10.6 before 10.9 was 
released) is not compatible with Mavericks (10.9): are you using that?

If so, please update your R to 3.0.2, or if you do not want to do that, 
update just R.app from r.research.att.com (which just now was serving me 
an empty page).

BTW, the 'bug' seems to be in OS X system calls in 10.9: we have merely 
worked around it.

On 12/01/2014 01:16, Amanda Charbonneau wrote:
> Hi,
>
> I have been experiencing a GUI bug for the last several weeks that I
> have just been able to identify as a reproducible error: Spelling and
> syntax mistakes that would normally result in an “object foobar not
> found” or “unexpected foo in bar” error message now result in an
> unrecoverable “caught segfault” error. The segfault can be triggered
> regardless of dataset size, packages, and runtime. All segfaults seem to
> report the same memory address. However, no other programs are reporting
> memory errors, and I can make a dataset of arbitrary size and perform an
> infinite number of typo-free calculations on it without encountering an
> error. I also cannot reproduce the errors in the terminal using the same
> R installation with the same typo-commands.
>
> Example:
>
>>     > taco <- c(1,2)
>>     > mean(taco)
>>     [1] 1.5
>>     > mean(tac)
>>     Error in mean(tac) : object 'tac' not found
>>
>>      *** caught segfault ***
>>     address 0x7c0, cause 'memory not mapped'
>>
>>     Possible actions:
>>     1: abort (with core dump, if enabled)
>>     2: normal R exit
>>     3: exit R without saving workspace
>>     4: exit R saving workspace
>>     Selection:
>
>
> I’m running:
> R version 3.0.1 (2013-05-16) -- "Good Sport"
> Copyright (C) 2013 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> [R.app GUI 1.61 (6492) x86_64-apple-darwin10.8.0]
>
> Crash report and Sessioninfo are attached. Any help/suggestions are
> appreciated. I don’t type accurately enough to run R without occasional
> typos, and it’s really making it difficult to work.
>
> Amanda
>
> Amanda Charbonneau
> Graduate Student
> Michigan State University
> charbo24 at msu.edu <mailto:charbo24 at msu.edu>
>
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> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac at r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>


-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



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