[R-SIG-Mac] packages impute

[Federico Calboli]

On 2 Jan 2013, at 10:23, Guillaume Meurice <guillaume.meurice at igr.fr> wrote:

> Dear all,
> 
> I recently got problem using "impute" package, which raise the following error message : 
> 
> "Error in ximp[junk$imiss == 2] <- NA : 
>  invalid type (bytecode) for 'dimnames' (must be a vector)"
> 
> 
> And from time-to-time, it also cause some segmentation fault.
> 
> Does anyone faced this problems ? Is it a known bug ? Sending the error message to google doesn't raise any interesting things …

1) you say the problem is caused by using the package impute but you do not explain what function causes the issue or whether R code that would normally run fine stops working once you load the library
2) in either case the first port of call is the package maintainer, not R-sig-mac

Please do provide extensive exaples to the package maintainer, with code and data explaining what you are trying to do, what is not working and what you expect to see.  Be advised that, if *you* are just not writing code correctly or making any other mistake, you could be told to Read The Fine Manual.

BW

F



> 
> thanks for feed back.
> 
> Bests
> --
> 
> 
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices datasets  utils     methods   base     
> 
> other attached packages:
> [1] plotrix_3.4-5              arrayQualityMetrics_3.12.0 multicore_0.1-7            pvclust_1.2-2              impute_1.30.0             
> [6] marray_1.34.0              limma_3.12.3               fortunes_1.5-0             snowfall_1.84              snow_0.3-10               
> 
> loaded via a namespace (and not attached):
> [1] affy_1.34.0           affyio_1.24.0         affyPLM_1.32.0        annotate_1.34.1       AnnotationDbi_1.18.4  beadarray_2.6.0       BeadDataPackR_1.8.0  
> [8] Biobase_2.16.0        BiocGenerics_0.2.0    BiocInstaller_1.4.9   Biostrings_2.24.1     Cairo_1.5-2           cluster_1.14.3        colorspace_1.2-0     
> [15] DBI_0.2-5             genefilter_1.38.0     grid_2.15.1           Hmisc_3.10-1          hwriter_1.3           IRanges_1.14.4        lattice_0.20-10      
> [22] latticeExtra_0.6-24   plyr_1.7.1            preprocessCore_1.18.0 RColorBrewer_1.0-5    reshape2_1.2.1        RSQLite_0.11.2        setRNG_2011.11-2     
> [29] splines_2.15.1        stats4_2.15.1         stringr_0.6.1         survival_2.36-14      SVGAnnotation_0.93-1  vsn_3.24.0            XML_3.95-0.1         
> [36] xtable_1.7-0          zlibbioc_1.2.0       
> 
> 
> 
> --
> Guillaume Meurice - PhD
> 
> 
> 
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 
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--
Federico C. F. Calboli
Neuroepidemiology and Ageing Research
Imperial College, St. Mary's Campus
Norfolk Place, London W2 1PG

Tel +44 (0)20 75941602   Fax +44 (0)20 75943193

f.calboli [.a.t] imperial.ac.uk
f.calboli [.a.t] gmail.com