[R-SIG-Mac] packages impute

[Prof Brian Ripley]

On 02/01/2013 10:23, Guillaume Meurice wrote:
> Dear all,
>
> I recently got problem using "impute" package, which raise the following error message :
>
> "Error in ximp[junk$imiss == 2] <- NA :
>    invalid type (bytecode) for 'dimnames' (must be a vector)"
>
>
> And from time-to-time, it also cause some segmentation fault.
>
> Does anyone faced this problems ? Is it a known bug ? Sending the error message to google doesn't raise any interesting things ...

That user-contributed software can cause internal corruption in R is 
well known.  These are both symptoms of that.

> thanks for feed back.

Follow the posting guide at http://www.r-project.org/posting-guide.html 
(and post general R questions on R-help: what might possibly have been 
Mac-specific here?).

>
> Bests
> --
>
>
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices datasets  utils     methods   base
>
> other attached packages:
>   [1] plotrix_3.4-5              arrayQualityMetrics_3.12.0 multicore_0.1-7            pvclust_1.2-2              impute_1.30.0
>   [6] marray_1.34.0              limma_3.12.3               fortunes_1.5-0             snowfall_1.84              snow_0.3-10
>
> loaded via a namespace (and not attached):
>   [1] affy_1.34.0           affyio_1.24.0         affyPLM_1.32.0        annotate_1.34.1       AnnotationDbi_1.18.4  beadarray_2.6.0       BeadDataPackR_1.8.0
>   [8] Biobase_2.16.0        BiocGenerics_0.2.0    BiocInstaller_1.4.9   Biostrings_2.24.1     Cairo_1.5-2           cluster_1.14.3        colorspace_1.2-0
> [15] DBI_0.2-5             genefilter_1.38.0     grid_2.15.1           Hmisc_3.10-1          hwriter_1.3           IRanges_1.14.4        lattice_0.20-10
> [22] latticeExtra_0.6-24   plyr_1.7.1            preprocessCore_1.18.0 RColorBrewer_1.0-5    reshape2_1.2.1        RSQLite_0.11.2        setRNG_2011.11-2
> [29] splines_2.15.1        stats4_2.15.1         stringr_0.6.1         survival_2.36-14      SVGAnnotation_0.93-1  vsn_3.24.0            XML_3.95-0.1
> [36] xtable_1.7-0          zlibbioc_1.2.0
>
>
>
> --
> Guillaume Meurice - PhD
>
>
>
>
>
>
> 	[[alternative HTML version deleted]]
>
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-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595