[R-SIG-Mac] phantom text in console with R 2.15.2

Dan Rabosky drabosky at umich.edu
Thu Nov 15 13:53:11 CET 2012


Hi All-

I have noticed a curious phenomenon since upgrading to R 2.15.2. I can't even consistently replicate the problem, but I will describe it as best as possible. I get "ghost text" in my R console echoing the names of variables that I am returning from functions. This occurs even when I am not calling the function but is observed simply after loading the functions into my workspace via source(....). Suppose I have a file "myFunctions.R", with a function like this:

myFunction <- function(){
	obj <- doSomething()
	class(obj) <- 'SomeClass'
	return(obj)
}

Upon sourcing the file (with source(...)), and sometimes upon executing the function itself, I sometimes (but not consistently) observe background gray text in console like this:

>source('myFunctions.R')
obj  > 

where "obj" is printed in gray (but this color is presumably dependent on R preferences...in any event, it is clearly distinct from font colors associated with printed return values, command line input, and error/warning messages). And sometimes when I execute the function (in a simulation or otherwise), I can get long streams of this that appear to be echoing the local (within-function) name of the returned variable, e.g.:

> source('mySimulationScript.R') # run a script file that iteratively calls myFunction(..)
obj 
obj
obj
obj
obj
obj
obj
obj
obj
obj  > ## the next R prompt: note displacement to right of phantom "obj" text

This looks identical to the screen text you can observe in an R console when running system commands with system(...), e.g., echoing terminal output to R console. 

Again, I can't even consistently replicate this. But I only observe the issue with R 2.15.2 (running the same code on R 2.15.1 does not lead to this behavior). I'm running R 2.15.2 on OSX 10.7.5:

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_2.15.2

~Dan Rabosky

_____________________
Dan Rabosky
Assistant Professor
Dept of Ecology and Evolutionary Biology
& Museum of Zoology
University of Michigan



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