[R-SIG-Mac] R 2.15.2, OS X 10.8.2, JGR

[Mike Parker]

I think today went well. Everyone ate and drank a lot less than they might have done. I bought plenty of everything to make sure that there was enough. I also bought food for tea in case they stayed but they didn't

On 28 Dec 2012, at 19:40, Roy Mendelssohn - NOAA Federal wrote:

> Hi All:
> 
> I recently upgraded my computer to 10.8.2, and my Java is now java 1.7 from Oracle.  I am running R 2.15.2, and now rjava and JGR don't work because what appears to be a problem with ipot.  I tried reinstalling rjava and got the following:
> 
>>> install.packages("rJava")
>> Installing package(s) into ‘/Users/rmendels/Library/R/2.15/library’
>> (as ‘lib’ is unspecified)
>> trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.15/rJava_0.9-3.tgz'
>> Content type 'application/x-gzip' length 791689 bytes (773 Kb)
>> opened URL
>> ==================================================
>> downloaded 773 Kb
>> 
>> 
>> The downloaded binary packages are in
>> 	/var/folders/s9/bk_j9rcd20j57ggb42zqkf040000gq/T//RtmpQLO8wa/downloaded_packages
>> Warning message:
>> In install.packages(c("iplots"), lib = "/Library/Frameworks/R.framework/Resources/library/",  :
>>  installation of package ‘iplots’ had non-zero exit status
>> 
> 
> 
> Then if I load JGR I get:
> 
>>> library(JGR)
>> Loading required package: rJava
>> Loading required package: JavaGD
>> Loading required package: iplots
>> Error : .onLoad failed in loadNamespace() for 'iplots', details:
>>  call: .jinit()
>>  error: JNI_GetCreatedJavaVMs returned -1
>> 
>> Error: package ‘iplots’ could not be loaded
>> JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
>> JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
>> JavaVM FATAL: Failed to load the jvm library.
>> 
> 
> 
> I tried building iplots from source, but that failed with basically the same error.  I assume iplots is looking for java 1.6.  Any ideas?
> 
> Thanks,
> 
> -Roy M.
> 
> **********************
> "The contents of this message do not reflect any position of the U.S. Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> 1352 Lighthouse Avenue
> Pacific Grove, CA 93950-2097
> 
> e-mail: Roy.Mendelssohn at noaa.gov (Note new e-mail address)
> voice: (831)-648-9029
> fax: (831)-648-8440
> www: http://www.pfeg.noaa.gov/
> 
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected" 
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
> 
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