[R-SIG-Mac] problem installing geepack package

[Simon Urbanek]

On Oct 25, 2011, at 3:23 AM, Prof Brian Ripley wrote:

> This is something you need to take up with the geepack maintainer (who is also the doBy maintainer).  I find his misuse of Depends ridiculous: we have Suggests and Enhances for such loose dependencies.
> 
> You can easily get snow, as a source or a binary package.
> 
> Did you update your packages?  Several packages which came with 2.13.2 have updates available: one is Matrix.
> 
> lme4 is tied to a specific version of Matrix, and the Mac binary package repository for 2.13.2 has versions of Matrix (0.999375-50) and lme4 (0.999375-40) which do not work together for me.  But the current Matrix is 1.0-1 and current lme4 is 0.999375-42. So AFAIK the only option is to install these packages from their sources.
> 
> Simon: the binary repository on the CRAN master for 2.14.0 has not be updated for 4 weeks and is rather incomplete,

Hmm.. something is wrong, indeed. Those binaries are from the bootstrap manual run, not from the automated builds. I'll have to investigate...


> and clearly the 2.13.2 area needs some updates.  

Those seem to be up to date, at least on my server:

hagal:2.13$ ls -lt|head
total 5489384
-rw-r--r--  1 urbanek  admin     22107 Oct 25 05:13 tilting_1.0.tgz
-rw-r--r--  1 urbanek  admin   1167011 Oct 25 05:11 sdcTable_0.9.8.tgz
-rw-r--r--  1 urbanek  admin   1430008 Oct 25 05:08 rococo_1.0.1.tgz
-rw-r--r--  1 urbanek  admin   1923962 Oct 25 05:01 npRmpi_0.40-10.tgz
-rw-r--r--  1 urbanek  admin     87766 Oct 25 04:59 neuRosim_0.2-8.tgz
-rw-r--r--  1 urbanek  admin   1215339 Oct 25 04:58 mritc_0.3-4.tgz
-rw-r--r--  1 urbanek  admin   1914854 Oct 25 04:56 metrumrg_5.3.tgz
-rw-r--r--  1 urbanek  admin   1039445 Oct 25 04:50 frailtypack_2.2-19.tgz
-rw-r--r--  1 urbanek  admin   1109695 Oct 25 04:46 dti_0.9-6.3.tgz


> With 2.14.0 less than a week away, this is getting urgent.
> 

Agreed, my apologies.
Simon


> Brian
> 
> 
> On Mon, 24 Oct 2011, Kathryn Lan wrote:
> 
>> Hello,
>> 
>> I am a new R-user.  I have a Mac OS.X 10.6.8.  I have downloaded R version
>> 2.13.2 (2011-09-30) onto my computer and been able to use basic stats
>> function.   Now I want to use the geepack package and when I try to load it
>> using library(geepack), it says I have to load these dependencies.
>> Apparently, some of these packages successfully loaded but some were not
>> (doBy and lme4).  The doBy needs the snow package which R says I don't have,
>> and I don't also have lme4 package.   I'm wondering why there's so much
>> trouble trying to load this geepack.  What is the primary problem behind
>> this?
>> 
>> Thank you for your help.
>> 
>> 
>> 
>> 
>>> library(geepack)
>> Loading required package: doBy
>> Loading required package: survival
>> Loading required package: splines
>> Loading required package: R2HTML
>> Loading required package: multcomp
>> Loading required package: mvtnorm
>> Loading required package: lme4
>> Loading required package: Matrix
>> Loading required package: lattice
>> 
>> Attaching package: 'Matrix'
>> 
>> The following object(s) are masked from 'package:base':
>> 
>>   det
>> 
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>> function 'cholmod_l_start' not provided by package 'Matrix'
>> Error: package 'lme4' could not be loaded
>> 
>> 	[[alternative HTML version deleted]]
>> 
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> 
> -- 
> Brian D. Ripley,                  ripley at stats.ox.ac.uk
> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> University of Oxford,             Tel:  +44 1865 272861 (self)
> 1 South Parks Road,                     +44 1865 272866 (PA)
> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
> 
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