[R-SIG-Mac] package with fortran failing to install

[Devin Johnson]

As you can see from the previous email I have installed Xcode 3.2.1 and from the first email, I've installed gfortran 4.2.3 from http://r.research.att.com/tools/. Is this not the corresponding gfortran?
-Devin

On Mar 29, 2010, at 3:18 PM, Simon Urbanek wrote:

> 
> On Mar 29, 2010, at 18:08 , Devin Johnson wrote:
> 
>> After installing Xcode again (3.2.1) I get the new error when building from the source posted on CRAN
>> 
>> $ R CMD INSTALL crawl_1.1-0.tar.gz
>> 
>> * installing to library ‘/Users/johnsond/Library/R/’
>> * installing *source* package ‘crawl’ ...
>> ** libs
>> ** arch - i386
>> gfortran-4.2 -arch i386  -fno-common -mtune=core2 -g -O2 -c  crwDriftN2ll.f90 -o crwDriftN2ll.o
>> crwDriftN2ll.f90:0: error: bad value (core2) for -mtune= switch
>> make: *** [crwDriftN2ll.o] Error 1
>> ERROR: compilation failed for package ‘crawl’
>> * removing ‘/Users/johnsond/Library/R//crawl’
>> * restoring previous ‘/Users/johnsond/Library/R//crawl’
>> 
>> Is there something else that disappeared with my upgrade to SL? Or is this now a gfortran problem?
>> 
> 
> The problem is still the same - you failing to read the docs! If you bothered to read the e-mails you'd know that you have to install Xcode 3.2 (or 3.2.1) and the corresponding Fortran from
> http://r.research.att.com/tools/
> 
> Cheers,
> Simon
> 
> 
>> 
>> 
>> On Mar 29, 2010, at 2:18 PM, Simon Urbanek wrote:
>> 
>>> 
>>> On Mar 29, 2010, at 16:45 , Devin Johnson wrote:
>>> 
>>>> Hi,
>>>> I have a problem compiling/installing a package that has fortran source code in it. I've compiled earlier versions of this package many times in the past as I've worked on it, but, now it's failing to install. I've recently go through an upgrade to snow leopard and installation/migration of my home directory for networking purposes at work (use AdmitMac with a domain account). I'm not sure which one of these might be causing the issue. Everything was fine before this. Here's the error:
>>>> 
>>>> $ R CMD INSTALL crawl
>>>> 
>>>> * installing to library ‘/Users/johnsond/Library/R/’
>>>> * installing *source* package ‘crawl’ ...
>>>> ** libs
>>>> ** arch - i386
>>>> sh: make: command not found
>>> 
>>> Please see the FAQ - you don't even have Xcode installed.
>>> 
>>> Cheers,
>>> Simon
>>> 
>>> 
>>> 
>>>> ERROR: compilation failed for package ‘crawl’
>>>> * removing ‘/Users/johnsond/Library/R//crawl’
>>>> * restoring previous ‘/Users/johnsond/Library/R//crawl’
>>>> 
>>>> 
>>>> Here's the gfortran version:
>>>> 
>>>> $ gfortran --version
>>>> GNU Fortran (GCC) 4.2.3
>>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>>> 
>>>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>>>> You may redistribute copies of GNU Fortran
>>>> under the terms of the GNU General Public License.
>>>> For more information about these matters, see the file named COPYING
>>>> 
>>>> $ which gfortran
>>>> /usr/local/bin/gfortran
>>>> 
>>>> The package ("crawl") is currently on CRAN and when I download the source, I get the same message. I've tried reinstalling R 2.10.1, gfortran 2.4.3, and poking around where I could, but I'm at a loss for what to check next. Any help would be greatly appreciated.
>>>> 
>>>> 
>>>> ----------------------------------------------------------
>>>> Devin S. Johnson, Ph.D.
>>>> Statistician
>>>> NOAA National Marine Mammal Laboratory
>>>> 7600 Sand Point Way NE
>>>> Seattle, WA 98115
>>>> Phone: (206) 526-6867
>>>> Fax: (206) 526-6115
>>>> Email: devin.johnson at noaa.gov
>>>> ----------------------------------------------------------
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 	[[alternative HTML version deleted]]
>>>> 
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac at stat.math.ethz.ch
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>> 
>> 
>> ----------------------------------------------------------
>> Devin S. Johnson, Ph.D.
>> Statistician
>> NOAA National Marine Mammal Laboratory
>> 7600 Sand Point Way NE
>> Seattle, WA 98115
>> Phone: (206) 526-6867
>> Fax: (206) 526-6115
>> Email: devin.johnson at noaa.gov
>> ----------------------------------------------------------
>> 
>> 
>> 
>> 
> 

----------------------------------------------------------
Devin S. Johnson, Ph.D.
Statistician
NOAA National Marine Mammal Laboratory
7600 Sand Point Way NE
Seattle, WA 98115
Phone: (206) 526-6867
Fax: (206) 526-6115
Email: devin.johnson at noaa.gov