[R-SIG-Mac] package with fortran failing to install

[Simon Urbanek]

On Mar 29, 2010, at 18:08 , Devin Johnson wrote:

> After installing Xcode again (3.2.1) I get the new error when  
> building from the source posted on CRAN
>
> $ R CMD INSTALL crawl_1.1-0.tar.gz
>
> * installing to library ‘/Users/johnsond/Library/R/’
> * installing *source* package ‘crawl’ ...
> ** libs
> ** arch - i386
> gfortran-4.2 -arch i386  -fno-common -mtune=core2 -g -O2 -c   
> crwDriftN2ll.f90 -o crwDriftN2ll.o
> crwDriftN2ll.f90:0: error: bad value (core2) for -mtune= switch
> make: *** [crwDriftN2ll.o] Error 1
> ERROR: compilation failed for package ‘crawl’
> * removing ‘/Users/johnsond/Library/R//crawl’
> * restoring previous ‘/Users/johnsond/Library/R//crawl’
>
> Is there something else that disappeared with my upgrade to SL? Or  
> is this now a gfortran problem?
>

The problem is still the same - you failing to read the docs! If you  
bothered to read the e-mails you'd know that you have to install Xcode  
3.2 (or 3.2.1) and the corresponding Fortran from
http://r.research.att.com/tools/

Cheers,
Simon


>
>
> On Mar 29, 2010, at 2:18 PM, Simon Urbanek wrote:
>
>>
>> On Mar 29, 2010, at 16:45 , Devin Johnson wrote:
>>
>>> Hi,
>>> I have a problem compiling/installing a package that has fortran  
>>> source code in it. I've compiled earlier versions of this package  
>>> many times in the past as I've worked on it, but, now it's failing  
>>> to install. I've recently go through an upgrade to snow leopard  
>>> and installation/migration of my home directory for networking  
>>> purposes at work (use AdmitMac with a domain account). I'm not  
>>> sure which one of these might be causing the issue. Everything was  
>>> fine before this. Here's the error:
>>>
>>> $ R CMD INSTALL crawl
>>>
>>> * installing to library ‘/Users/johnsond/Library/R/’
>>> * installing *source* package ‘crawl’ ...
>>> ** libs
>>> ** arch - i386
>>> sh: make: command not found
>>
>> Please see the FAQ - you don't even have Xcode installed.
>>
>> Cheers,
>> Simon
>>
>>
>>
>>> ERROR: compilation failed for package ‘crawl’
>>> * removing ‘/Users/johnsond/Library/R//crawl’
>>> * restoring previous ‘/Users/johnsond/Library/R//crawl’
>>>
>>>
>>> Here's the gfortran version:
>>>
>>> $ gfortran --version
>>> GNU Fortran (GCC) 4.2.3
>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>>
>>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>>> You may redistribute copies of GNU Fortran
>>> under the terms of the GNU General Public License.
>>> For more information about these matters, see the file named COPYING
>>>
>>> $ which gfortran
>>> /usr/local/bin/gfortran
>>>
>>> The package ("crawl") is currently on CRAN and when I download the  
>>> source, I get the same message. I've tried reinstalling R 2.10.1,  
>>> gfortran 2.4.3, and poking around where I could, but I'm at a loss  
>>> for what to check next. Any help would be greatly appreciated.
>>>
>>>
>>> ----------------------------------------------------------
>>> Devin S. Johnson, Ph.D.
>>> Statistician
>>> NOAA National Marine Mammal Laboratory
>>> 7600 Sand Point Way NE
>>> Seattle, WA 98115
>>> Phone: (206) 526-6867
>>> Fax: (206) 526-6115
>>> Email: devin.johnson at noaa.gov
>>> ----------------------------------------------------------
>>>
>>>
>>>
>>>
>>>
>>> 	[[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>
>
> ----------------------------------------------------------
> Devin S. Johnson, Ph.D.
> Statistician
> NOAA National Marine Mammal Laboratory
> 7600 Sand Point Way NE
> Seattle, WA 98115
> Phone: (206) 526-6867
> Fax: (206) 526-6115
> Email: devin.johnson at noaa.gov
> ----------------------------------------------------------
>
>
>
>