[R-SIG-Mac] unsupported file format which is not the architecture being linked (i386)

[Richard R. Liu]

I am trying to install a package from source on R 2.11.1 patched running on Apple OS X 10.6.4 Snow Leopard.  I have downloaded the package source to a local directory.  When I issue R CMD INSTALL from the Terminal only the  64-bit version is built.  When I try to install the source from the R GUI only the 32-bit version is built, but the build produces an error ("unsupported file format which is not the architecture being linked (i386)") and so does not succeed.  I also tried installing the 32-bit version from the command line by issuing the command R --arch i386 CMD INSTALL but that produced the same error as installing from the R GUI

What do I need to do to build both versions?

Thanks,

Richard R. Liu
Dittingerstr. 33
CH-4053 Basel
Switzerland

Tel.:  +41 61 331 10 47
Mobil: +41 79 708 67 66
Email:  richard.liu at pueo-owl.ch


The output of the two attempts to install the package follow:

-------------------------
Install from command line
-------------------------

RRL-MacBookPro:~ sim$ R CMD INSTALL
/Users/sim/Downloads/Rlibstemmer_0.1-0.tar.gz
* installing to library ‘/Users/sim/Library/R/2.11/library’
* installing *source* package ‘Rlibstemmer’ ...
make: Nothing to be done for `all'.
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64
-I../inst/libstemmer_c/include -I/usr/local/include    -fPIC  -g -O2 -c
listAlgorithms.c -o listAlgorithms.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64
-I../inst/libstemmer_c/include -I/usr/local/include    -fPIC  -g -O2 -c
stemWords.c -o stemWords.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names
-undefined dynamic_lookup -single_module -multiply_defined suppress
-L/usr/local/lib -o Rlibstemmer.so listAlgorithms.o stemWords.o
../inst/libstemmer_c/libstemmer.o -F/Library/Frameworks/R.framework/..
-framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/sim/Library/R/2.11/library/Rlibstemmer/libs/x86_64
** R
** inst
** preparing package for lazy loading
** help
No man pages found in package  ‘Rlibstemmer’ 
*** installing help indices
** building package indices ...
** testing if installed package can be loaded


* DONE (Rlibstemmer)

------------------
Install from R GUI
------------------

* installing *source* package ‘Rlibstemmer’ ...
make: Nothing to be done for `all'.
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/i386
-I../inst/libstemmer_c/include -I/usr/local/include    -fPIC  -g -O2 -c
listAlgorithms.c -o listAlgorithms.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/i386
-I../inst/libstemmer_c/include -I/usr/local/include    -fPIC  -g -O2 -c
stemWords.c -o stemWords.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names
-undefined dynamic_lookup -single_module -multiply_defined suppress
-L/usr/local/lib -o Rlibstemmer.so listAlgorithms.o stemWords.o
../inst/libstemmer_c/libstemmer.o -F/Library/Frameworks/R.framework/..
-framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: in ../inst/libstemmer_c/libstemmer.o, file was built for
unsupported file format which is not the architecture being linked (i386)
installing to /Users/sim/Library/R/2.11/library/Rlibstemmer/libs/i386
** R
** inst
** preparing package for lazy loading
** help
No man pages found in package  ‘Rlibstemmer’ 
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared library
'/Users/sim/Library/R/2.11/library/Rlibstemmer/libs/i386/Rlibstemmer.so':
  dlopen(/Users/sim/Library/R/2.11/library/Rlibstemmer/libs/i386/Rlibstemmer.so,
6): Symbol not found: _sb_stemmer_delete
  Referenced from:
/Users/sim/Library/R/2.11/library/Rlibstemmer/libs/i386/Rlibstemmer.so
  Expected in: flat namespace
 in /Users/sim/Library/R/2.11/library/Rlibstemmer/libs/i386/Rlibstemmer.so
ERROR: loading failed
* removing ‘/Users/sim/Library/R/2.11/library/Rlibstemmer’
* restoring previous ‘/Users/sim/Library/R/2.11/library/Rlibstemmer’

-------------- next part --------------
A non-text attachment was scrubbed...
Name: smime.p7s
Type: application/pkcs7-signature
Size: 3686 bytes
Desc: not available
URL: <https://stat.ethz.ch/pipermail/r-sig-mac/attachments/20100811/bc0edca6/attachment.bin>