[R-SIG-Mac] R-alpha on SL system
rkoenker at illinois.edu
Mon Oct 12 00:22:52 CEST 2009
Thanks Simon. Starting with a fresh source directory and building
one level up from the source did indeed resolve everything just as
My usual set of packages also installed fine except for rgl once I
realized that I need
to invoke R as R --arch x86_64.
Thanks for your patience,
PS. Is the rgl a known issue? I get
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package 'rgl'
* removing '/Library/Frameworks/R.framework/Versions/2.10/Resources/
R version 2.10.0 alpha (2009-10-09 r50012)
attached base packages:
 stats graphics grDevices utils datasets methods base
jpeg png tiff tcltk X11 aqua http/ftp sockets
TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE
libxml fifo cledit iconv NLS profmem cairo
TRUE TRUE TRUE TRUE TRUE FALSE FALSE
On Oct 11, 2009, at 3:36 PM, Simon Urbanek wrote:
> from your logs you are still using the wrong compilers (missing -
> arch flags) and not following the instructions (you're building in
> the sources as far as I can tell). Please make sure you're setting
> FC and F77 correctly including the -arch flag and don't build in the
> sources. If in doubt, please send us the exact configure line you're
> using. (And make sure you remove everything in the build directory
> before re-trying).
> On Oct 11, 2009, at 3:54 PM, Roger Koenker wrote:
>> I read this thread,
>> but didn't see this post:
>> Unfortunately, I can't get this to work either, the configure step
>> seems to
>> end normally, although there is a warning about "missing packages.
>> make -j8 && make install
>> ends with error: cannot use Fortran. But
>> yzzy: which gfortran /usr/local/bin/gfortran yzzy:
>> gfortran --version
>> GNU Fortran (GCC) 4.2.3
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> As for the binary install, the pkg installer produced eventually
>> a window that said "Failed" in red rather than the usual green
>> Installation Successful -- but it wasn't clear where to look
>> for the entrails. I've replaced the old config.log on the web
>> with the new one based on the recommended configure lines.
>> On Oct 11, 2009, at 2:21 PM, Simon Urbanek wrote:
>>> please read the list before posing - I have even posted detailed
>>> instructions for SL (you are mixing 32 bit and 64 bit). As for the
>>> binary install -- can you, please, share the details with us?
>>> On Oct 11, 2009, at 1:19 PM, Roger Koenker wrote:
>>>> I am trying to install R-alpha R-2.10.0 (yesterdays version) on a
>>>> mac pro system that I've
>>>> recently upgraded to SL and xcode 3.2. I've tried both the
>>>> binary install which fails, and
>>>> building from source: the config.log file can be seen here:
>>>> Version 2.9.2 built from sources without problems after the SL
>>>> upgrade.... which I
>>>> took as a good omen for the general sanity of the system, but
>>>> apparently this was
>>>> a mistake.
>>>> I presume that this has something to do with conflicts with old
>>>> gfortrans. I've installed
>>>> gfortran 4.2.3 but perhaps there are remnants of older versions
>>>> still hanging around?
>>>> Many thanks for any hints,
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac at stat.math.ethz.ch
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