[R-SIG-Mac] package installation issues

[Michael Barnett]

I apologize for not being more precise. I'm pasting the printout I get  
below:

*****
 > install.packages("igraph")
trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.10/igraph_0.5.2-2.tgz'
Content type 'application/x-gzip' length 3312372 bytes (3.2 Mb)
opened URL
==================================================
downloaded 3.2 Mb


The downloaded packages are in
	/var/folders/7J/7JpbFNySGACoH3teAShOLE+++TM/-Tmp-//RtmpXG1NQC/ 
downloaded_packages
 > library(igraph)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
   unable to load shared library '/Library/Frameworks/R.framework/ 
Resources/library/igraph/libs/x86_64/igraph.so':
   dlopen(/Library/Frameworks/R.framework/Resources/library/igraph/ 
libs/x86_64/igraph.so, 10): Symbol not found: ___gmpz_clear
   Referenced from: /Library/Frameworks/R.framework/Resources/library/ 
igraph/libs/x86_64/igraph.so
   Expected in: dynamic lookup

Error : .onLoad failed in 'loadNamespace' for 'igraph'
Error: package/namespace load failed for 'igraph'
******

What's different between my set-up and yours, Steve? I'm on a 13"  
MacBook 2.4Ghz 4GB RAM running OS X 10.5.8

-Michael


On Nov 12, 2009, at 12:38 PM, Steve Lianoglou wrote:

> Hi Michael,
>
> On Nov 12, 2009, at 12:34 PM, Michael Barnett wrote:
>
>> Hi R Mac list -
>>
>> I'm a newcomer to R and recently installed the new 2.10 version. I  
>> had
>> to uninstall it and go back to 2.9 because I couldn't run the igraph
>> package, it gave me an error. Also, I found that I couldn't load the
>> rrgobi package into the new version either and there's an error
>> message on the CRAN package site for the Mac version of rggobi as
>> well. I just wanted to report this error, I'm happy with 2.9 for now.
>
> While I can't speak to using rrgobi, I definitely use igraph  
> everyday, and I'm using R 2.10
>
> Could you elaborate on the error you were getting when trying to  
> "run" (load?) igraph?
>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  |  Memorial Sloan-Kettering Cancer Center
>  |  Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>