[R-SIG-Mac] mac OS X 10.5.7 rgdal installation problems
macq at llnl.gov
Thu Jul 2 21:48:17 CEST 2009
There is a binary download of rgdal, though apparently not the most
recent rgdal, at
Which I learned about in the process of installing and using open
source GIS software QGis:
which leads to
which in turn leads to the above link.
It will be necessary to also (first) install other frameworks that
this binary of rgdal depends on.
But I do have a functioning rgdal from the above.
Loading required package: rgdal
Loading required package: sp
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 1.5.3, released 2008/09/09
Loaded PROJ.4 runtime: Rel. 4.6.1, 21 August 2008
At 10:47 AM -0500 7/2/09, stephen sefick wrote:
>sudo R CMD install --configure-args='--with-proj-include=/sw/bin/proj'
>* Installing to library '/Library/Frameworks/R.framework/Resources/library'
>* Installing *source* package 'rgdal' ...
>checking for gcc... gcc -arch i386 -std=gnu99
>checking for C compiler default output file name... configure: error:
>C compiler cannot create executables
>See `config.log' for more details.
>ERROR: configuration failed for package 'rgdal'
>* Removing '/Library/Frameworks/R.framework/Resources/library/rgdal'
>there is a C compiler problem? I have XCode 3.1.2.
>On Thu, Jul 2, 2009 at 10:05 AM, stephen sefick<ssefick at gmail.com> wrote:
>> platform i386-apple-darwin8.11.1
>> arch i386
>> os darwin8.11.1
>> system i386, darwin8.11.1
>> major 2
>> minor 9.1
>> year 2009
>> month 06
>> day 26
>> svn rev 48839
>> language R
>> version.string R version 2.9.1 (2009-06-26)
>> gdal-config, proj, and ogr are in my path. I type them at the shell
>> prompt and they work. They were installed using fink so they are in
>> the /sw/bin directory. The installation did not work without
>> configuration flags and gave me the same error message that is at the
>> end of the transcript, so I decided to tell R CMD install where proj
>> was. Below is the transcript of my session:
>> sudo R CMD install --configure-args='--with-proj=/sw/bin/proj'
>> * Installing to library '/Library/Frameworks/R.framework/Resources/library'
>> * Installing *source* package 'rgdal' ...
>> gdal-config: gdal-config
>> checking for gcc... gcc -arch i386 -std=gnu99
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables...
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
>> checking for gcc -arch i386 -std=gnu99 option to accept ANSI C...
>> checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
>> checking for egrep... grep -E
>> checking for ANSI C header files... rm: conftest.dSYM: is a directory
>> rm: conftest.dSYM: is a directory
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking proj_api.h usability... no
>> checking proj_api.h presence... no
>> checking for proj_api.h... no
>> Error: proj_api.h not found.
>> If the PROJ.4 library is installed in a non-standard location,
>> use --configure-args='--with-proj-include=/opt/local/include'
> > for example, replacing /opt/local/* with appropriate values
>> for your installation. If PROJ.4 is not installed, install it.
>> ERROR: configuration failed for package 'rgdal'
>> * Removing '/Library/Frameworks/R.framework/Resources/library/rgdal'
>> any help would be greatly appreciated.
>Let's not spend our time and resources thinking about things that are
>so little or so large that all they really do for us is puff us up and
>make us feel like gods. We are mammals, and have not exhausted the
>annoying little problems of being mammals.
> -K. Mullis
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