[R-SIG-Mac] installation of affy under Mac OS X 10.5.6 (Leopard)

[James W. MacDonald]

And downloading the tarball and installing is a recipe for failure. If 
you want to install source packages, just use the correct arguments.

biocLite("affy", type = "source")

will get you the correct affy version plus all required dependencies.

Best,

Jim



Kjell Konis wrote:
> It looks like you don't have all the development tools installed.  The 
> missing library /usr/local/lib/libgfortran.2.dylib is part of the 
> Fortran compiler which is included with the full R installer.
> 
> Kjell
> 
> 
> On 21 avr. 09, at 15:10, Massimo Pinto wrote:
> 
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>  unable to load shared library
>> '/Library/Frameworks/R.framework/Resources/library/preprocessCore/libs/i386/preprocessCore.so': 
>>
>>  dlopen(/Library/Frameworks/R.framework/Resources/library/preprocessCore/libs/i386/preprocessCore.so, 
>>
>> 6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
>>  Referenced from:
>> /Library/Frameworks/R.framework/Resources/library/preprocessCore/libs/i386/preprocessCore.so 
>>
>>  Reason: image not found
>> Error: package/namespace load failed for 'affy'
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826