[R-SIG-Mac] Problems with RMA normalization in 2.6 versions

[Balasubramanian Ganesan]

My apologies!!


On Mar 4, 2008, at 3:16 PM, Simon Urbanek wrote:

> Wrong list - R-SIG-Mac is about Mac related questions concerning R  
> (as the name says). Your question has nothing to do with R itself  
> or with Macs. Try BioC help lists since you're talking about 3rd  
> party (BioC) contributed packages below.
>
> Thanks,
> Simon
>
> On Mar 4, 2008, at 4:08 PM, Balasubramanian Ganesan wrote:
>
>> Hi all
>> I have been seeing some issues with R 2.6 (both 1 & 2) that when I
>> normalize data using rma() or justRMA(), the data is transposed i.e.
>> probes are columns and samples are rows. Currently I am transposing
>> my data, but this does cause inconvenieces in analyzing data further
>> with our normal routines.
>> Can this be fixed?
>>
>> Balasubramanian Ganesan
>> Research Assistant Professor
>> Center for Integrated BioSystems
>> Utah State University
>> 4700 Old Main Hill
>> Logan UT 84322
>> balag at cc.usu.edu
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>
>>
>

Balasubramanian Ganesan
Research Assistant Professor
Center for Integrated BioSystems
Utah State University
4700 Old Main Hill
Logan UT 84322
balag at cc.usu.edu