[R-SIG-Mac] compiling packages from source fails

[Simon Urbanek]

Wouter,

On Sep 6, 2007, at 6:43 AM, wouter.buytaert at scarlet.be wrote:

>
> Hi list,
>
> I just upgraded to R 2.5.1 (OSX 10.4.10) and tried to reinstall  
> some packages from source. But the compilation fails because -I/usr/ 
> include is not passed to the compiler and it can't find the header  
> files.

-I/usr/include is not needed as those are system libraries.

> Any ideas how to solve this? (gcc works fine in other circumstances  
> - I tried several packages with the same problem).
>

Please make sure you have upgraded to Xcode 2.4.1 (as per FAQ) and  
you didn't de-install 10.4 universal SDK.

Cheers,
Simon


>
> the output:
>
>
> macbook:~/Desktop wouter$ sudo R CMD install gstat_0.9-39.tar.gz
> * Installing to library '/Library/Frameworks/R.framework/Resources/ 
> library'
> * Installing *source* package 'gstat' ...
> creating cache ./config.cache
> checking for gcc... gcc
> checking whether the C compiler (gcc  ) works... yes
> [...]
> creating src/config.h
> creating src/machine.h
> ** libs
> ** arch - i386
> gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no- 
> cpp-precomp
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3
> -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=nocona -c  
> block.c -o
> block.o
> block.c:30:19: error: stdio.h: No such file or directory
> block.c:31:18: error: math.h: No such file or directory
> In file included from block.c:34:
> [...]
>
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