[R-SIG-Mac] Error loading grDevices.so
Gene
gene02_rsigmac at smalltime.com
Fri Sep 22 19:52:28 CEST 2006
On Sep 21, 2006, at 2:36 PM, Simon Urbanek wrote:
> Gene,
>
> can you, please, make sure that you don't have any stray
> DYLD_LIBRARY_PATH settings in your environment when you are trying
> this? If you are sure that it's not the case, please send me the
> full output of the following (in Terminal):
>
> set
> uname -a
> DYLD_PRINT_LIBRARIES=1 R
> Sys.getenv("DYLD_LIBRARY_PATH")
Here you go:
> set
BASH=/bin/bash
BASH_VERSINFO=([0]="2" [1]="05b" [2]="0" [3]="1" [4]="release" [5]
="powerpc-apple-darwin8.0")
BASH_VERSION='2.05b.0(1)-release'
CFLAGS=' -march=pentium4 -O3 -pipe -fomit-frame-pointer'
COLUMNS=98
CURRDIR=
CXXFLAGS=' -march=pentium4 -O3 -pipe -fomit-frame-pointer'
DIR=/Users/gene
DIRSTACK=()
EDITOR=emacs
FFLAGS=' -O3'
FTP_PASSIVE=1
GROUPS=()
HISTCONTROL=ignoredups
HISTFILESIZE=1000
HISTSIZE=1000
HOSTTYPE=powerpc
IFS=$' \t\n'
LESS=-X
LINES=56
MACHTYPE=powerpc-apple-darwin8.0
MAILCHECK=60
OPTERR=1
OPTIND=1
OSTYPE=darwin8.0
PATH=/usr/local/bin:/usr/local/bin:/bin:/sbin:/usr/bin:/usr/local/
bin:/usr/sbin:/usr/local/bin/phylip:/Library/MySQL/bin:/Developer/
Tools:/Users/gene/bin:/Users/gene/Bioinformatics/code:.:/opt/local/bin
PIPESTATUS=([0]="0")
PLPLOT_LIB=/usr/local/lib
PPID=1725
PROMPT_COMMAND=prompt_command
PS1='\033[1;33m\u:~ \!> \033[0;0m'
PS2='> '
PS4='+ '
SECURITYSESSIONID=5a3ec0
SHELL=/bin/bash
SHELLOPTS=braceexpand:emacs:hashall:histexpand:history:interactive-
comments:monitor
SHLVL=1
SSH_AGENT_PID=493
SSH_AUTH_SOCK=/tmp/ssh-kE5GPTtS/agent.490
TERM=xterm-color
TERM_PROGRAM=Apple_Terminal
TERM_PROGRAM_VERSION=133
VISUAL=emacs
_=R
__CF_USER_TEXT_ENCODING=0x1F5:0:0
graphViewer=Preview.app
i='/etc/profile.d/*.sh'
newPWD='~'
pwd_length=30
showViewer=Safari.app
textViewer=BBEdit.app
> uname -a
Darwin ASF2-261-Gene.local 8.7.2 Darwin Kernel Version 8.7.2: Tue Jul
25 23:09:54 PDT 2006; root:xnu-792.10.96.obj~3/RELEASE_I386 i386 i386
> DYLD_PRINT_LIBRARIES=1 R
dyld: loaded: /bin/sh
dyld: loaded: /usr/lib/libncurses.5.4.dylib, cpu-sub-type: 3
dyld: loaded: /usr/lib/libSystem.B.dylib, cpu-sub-type: 3
dyld: loaded: /usr/lib/libgcc_s.1.dylib, cpu-sub-type: 3
dyld: loaded: /usr/lib/system/libmathCommon.A.dylib, cpu-sub-type: 3
dyld: loaded: /Library/Frameworks/R.framework/Versions/2.3/Resources/
bin/exec/R
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/
libR.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libmx.A.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libSystem.B.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/vecLib.framework/Versions/A/
vecLib, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/
libgfortran.0.dylib, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/libgcc_s.
1.0.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreFoundation.framework/
Versions/A/CoreFoundation, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/
libreadline.5.1.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libiconv.2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib,
cpu-sub-type: 0
dyld: loaded: /usr/lib/libgcc_s.1.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/system/libmathCommon.A.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libicucore.A.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libauto.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libobjc.A.dylib, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/libstdc++.
6.dylib, cpu-sub-type: 0
R : Copyright 2006, The R Foundation for Statistical Computing
Version 2.3.1 (2006-06-01)
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
dyld: loaded: /Library/Frameworks/R.framework/Resources/library/
grDevices/libs/ppc/grDevices.so
dyld: loaded: /System/Library/Frameworks/AppKit.framework/Versions/C/
AppKit, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/ApplicationServices, cpu-sub-
type: 0
dyld: loaded: /System/Library/Frameworks/Carbon.framework/Versions/A/
Frameworks/HIToolbox.framework/Versions/A/HIToolbox, cpu-sub-type: 0
dyld: loaded: /usr/lib/libz.1.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Foundation.framework/
Versions/C/Foundation, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Carbon.framework/Versions/A/
Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition,
cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/AudioToolbox.framework/
Versions/A/AudioToolbox, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/AudioUnit.framework/Versions/
A/AudioUnit, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Security.framework/Versions/
A/Security, cpu-sub-type: 0
dyld: loaded: /System/Library/PrivateFrameworks/
DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv, cpu-sub-
type: 0
dyld: loaded: /System/Library/Frameworks/IOKit.framework/Versions/A/
IOKit, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreData.framework/Versions/
A/CoreData, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/QuartzCore.framework/
Versions/A/QuartzCore, cpu-sub-type: 0
dyld: loaded: /usr/lib/libxml2.2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/AE.framework/
Versions/A/AE, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/
Versions/A/ATS, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
ColorSync.framework/Versions/A/ColorSync, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreGraphics.framework/Versions/A/CoreGraphics, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
CoreText.framework/Versions/A/CoreText, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/CoreServices, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
PrintCore.framework/Versions/A/PrintCore, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/QD.framework/
Versions/A/QD, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
HIServices.framework/Versions/A/HIServices, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
LangAnalysis.framework/Versions/A/LangAnalysis, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
FindByContent.framework/Versions/A/FindByContent, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
LaunchServices.framework/Versions/A/LaunchServices, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/
SpeechSynthesis.framework/Versions/A/SpeechSynthesis, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/ImageIO, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
SystemConfiguration.framework/Versions/A/SystemConfiguration, cpu-sub-
type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/WebServicesCore.framework/Versions/A/
WebServicesCore, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit, cpu-
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata, cpu-sub-
type: 0
dyld: loaded: /System/Library/Frameworks/DiskArbitration.framework/
Versions/A/DiskArbitration, cpu-sub-type: 0
dyld: loaded: /usr/lib/libbsm.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libcrypto.0.9.7.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libcups.2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libJPEG.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libJP2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libGIF.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libRaw.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libTIFF.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libPng.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/
Versions/A/Resources/libRadiance.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Accelerate, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Frameworks/vImage.framework/Versions/A/vImage, cpu-sub-
type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/
Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib, cpu-sub-
type: 0
dyld: loaded: /System/Library/Frameworks/Carbon.framework/Versions/A/
Frameworks/CarbonSound.framework/Versions/A/CarbonSound, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreAudio.framework/Versions/
A/CoreAudio, cpu-sub-type: 0
dyld: loaded: /usr/lib/libsqlite3.0.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/
OpenGL, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/
Libraries/libGLImage.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/
Libraries/libGLU.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/
Libraries/libGL.dylib, cpu-sub-type: 0
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Library/Frameworks/
R.framework/Resources/library/grDevices/libs/ppc/grDevices.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/grDevices/
libs/ppc/grDevices.so, 6): Symbol not found: ___eprintf
Referenced from: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
Expected in: /Library/Frameworks/R.framework/Resources/lib/libstdc+
+.6.dylib
Loading required package: grDevices
dyld: loaded: /Library/Frameworks/R.framework/Resources/library/
grDevices/libs/ppc/grDevices.so
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/Library/Frameworks/
R.framework/Resources/library/grDevices/libs/ppc/grDevices.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/grDevices/
libs/ppc/grDevices.so, 6): Symbol not found: ___eprintf
Referenced from: /System/Library/Frameworks/CoreServices.framework/
Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
Expected in: /Library/Frameworks/R.framework/Resources/lib/libstdc+
+.6.dylib
In addition: Warning message:
package grDevices in options("defaultPackages") was not found
Error: package 'grDevices' could not be loaded
>
> Sys.getenv("DYLD_LIBRARY_PATH")
DYLD_LIBRARY_PATH
"/Library/Frameworks/R.framework/Resources/lib:"
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