[R-SIG-Mac] Error loading grDevices.so

Gene gene02_rsigmac at smalltime.com
Fri Sep 22 19:52:28 CEST 2006 

On Sep 21, 2006, at 2:36 PM, Simon Urbanek wrote:

> Gene,
>
> can you, please, make sure that you don't have any stray  
> DYLD_LIBRARY_PATH settings in your environment when you are trying  
> this? If you are sure that it's not the case, please send me the  
> full output of the following (in Terminal):
>
> set
> uname -a
> DYLD_PRINT_LIBRARIES=1 R
> Sys.getenv("DYLD_LIBRARY_PATH")


Here you go:

 > set
BASH=/bin/bash
BASH_VERSINFO=([0]="2" [1]="05b" [2]="0" [3]="1" [4]="release" [5] 
="powerpc-apple-darwin8.0")
BASH_VERSION='2.05b.0(1)-release'
CFLAGS=' -march=pentium4 -O3 -pipe -fomit-frame-pointer'
COLUMNS=98
CURRDIR=
CXXFLAGS=' -march=pentium4 -O3 -pipe -fomit-frame-pointer'
DIR=/Users/gene
DIRSTACK=()
EDITOR=emacs
FFLAGS=' -O3'
FTP_PASSIVE=1
GROUPS=()
HISTCONTROL=ignoredups
HISTFILESIZE=1000
HISTSIZE=1000
HOSTTYPE=powerpc
IFS=$' \t\n'
LESS=-X
LINES=56
MACHTYPE=powerpc-apple-darwin8.0
MAILCHECK=60
OPTERR=1
OPTIND=1
OSTYPE=darwin8.0
PATH=/usr/local/bin:/usr/local/bin:/bin:/sbin:/usr/bin:/usr/local/ 
bin:/usr/sbin:/usr/local/bin/phylip:/Library/MySQL/bin:/Developer/ 
Tools:/Users/gene/bin:/Users/gene/Bioinformatics/code:.:/opt/local/bin
PIPESTATUS=([0]="0")
PLPLOT_LIB=/usr/local/lib
PPID=1725
PROMPT_COMMAND=prompt_command
PS1='\033[1;33m\u:~ \!> \033[0;0m'
PS2='> '
PS4='+ '
SECURITYSESSIONID=5a3ec0
SHELL=/bin/bash
SHELLOPTS=braceexpand:emacs:hashall:histexpand:history:interactive- 
comments:monitor
SHLVL=1
SSH_AGENT_PID=493
SSH_AUTH_SOCK=/tmp/ssh-kE5GPTtS/agent.490
TERM=xterm-color
TERM_PROGRAM=Apple_Terminal
TERM_PROGRAM_VERSION=133
VISUAL=emacs
_=R
__CF_USER_TEXT_ENCODING=0x1F5:0:0
graphViewer=Preview.app
i='/etc/profile.d/*.sh'
newPWD='~'
pwd_length=30
showViewer=Safari.app
textViewer=BBEdit.app

 > uname -a
Darwin ASF2-261-Gene.local 8.7.2 Darwin Kernel Version 8.7.2: Tue Jul  
25 23:09:54 PDT 2006; root:xnu-792.10.96.obj~3/RELEASE_I386 i386 i386


 > DYLD_PRINT_LIBRARIES=1 R
dyld: loaded: /bin/sh
dyld: loaded: /usr/lib/libncurses.5.4.dylib, cpu-sub-type: 3
dyld: loaded: /usr/lib/libSystem.B.dylib, cpu-sub-type: 3
dyld: loaded: /usr/lib/libgcc_s.1.dylib, cpu-sub-type: 3
dyld: loaded: /usr/lib/system/libmathCommon.A.dylib, cpu-sub-type: 3
dyld: loaded: /Library/Frameworks/R.framework/Versions/2.3/Resources/ 
bin/exec/R
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/ 
libR.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libmx.A.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libSystem.B.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/vecLib.framework/Versions/A/ 
vecLib, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/ 
libgfortran.0.dylib, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/libgcc_s. 
1.0.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreFoundation.framework/ 
Versions/A/CoreFoundation, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/ 
libreadline.5.1.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libiconv.2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib,  
cpu-sub-type: 0
dyld: loaded: /usr/lib/libgcc_s.1.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/system/libmathCommon.A.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libicucore.A.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libauto.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libobjc.A.dylib, cpu-sub-type: 0
dyld: loaded: /Library/Frameworks/R.framework/Resources/lib/libstdc++. 
6.dylib, cpu-sub-type: 0

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Version 2.3.1 (2006-06-01)
ISBN 3-900051-07-0

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dyld: loaded: /Library/Frameworks/R.framework/Resources/library/ 
grDevices/libs/ppc/grDevices.so
dyld: loaded: /System/Library/Frameworks/AppKit.framework/Versions/C/ 
AppKit, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/ApplicationServices, cpu-sub- 
type: 0
dyld: loaded: /System/Library/Frameworks/Carbon.framework/Versions/A/ 
Frameworks/HIToolbox.framework/Versions/A/HIToolbox, cpu-sub-type: 0
dyld: loaded: /usr/lib/libz.1.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Foundation.framework/ 
Versions/C/Foundation, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Carbon.framework/Versions/A/ 
Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition,  
cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/AudioToolbox.framework/ 
Versions/A/AudioToolbox, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/AudioUnit.framework/Versions/ 
A/AudioUnit, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Security.framework/Versions/ 
A/Security, cpu-sub-type: 0
dyld: loaded: /System/Library/PrivateFrameworks/ 
DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv, cpu-sub- 
type: 0
dyld: loaded: /System/Library/Frameworks/IOKit.framework/Versions/A/ 
IOKit, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreData.framework/Versions/ 
A/CoreData, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/QuartzCore.framework/ 
Versions/A/QuartzCore, cpu-sub-type: 0
dyld: loaded: /usr/lib/libxml2.2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/AE.framework/ 
Versions/A/AE, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/ 
Versions/A/ATS, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
ColorSync.framework/Versions/A/ColorSync, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
CoreGraphics.framework/Versions/A/CoreGraphics, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
CoreText.framework/Versions/A/CoreText, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/CoreServices, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
PrintCore.framework/Versions/A/PrintCore, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/QD.framework/ 
Versions/A/QD, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
HIServices.framework/Versions/A/HIServices, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
LangAnalysis.framework/Versions/A/LangAnalysis, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
FindByContent.framework/Versions/A/FindByContent, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
LaunchServices.framework/Versions/A/LaunchServices, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
SpeechSynthesis.framework/Versions/A/SpeechSynthesis, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/ImageIO, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
SystemConfiguration.framework/Versions/A/SystemConfiguration, cpu-sub- 
type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/WebServicesCore.framework/Versions/A/ 
WebServicesCore, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit, cpu- 
sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata, cpu-sub- 
type: 0
dyld: loaded: /System/Library/Frameworks/DiskArbitration.framework/ 
Versions/A/DiskArbitration, cpu-sub-type: 0
dyld: loaded: /usr/lib/libbsm.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libcrypto.0.9.7.dylib, cpu-sub-type: 0
dyld: loaded: /usr/lib/libcups.2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libJPEG.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libJP2.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libGIF.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libRaw.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libTIFF.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libPng.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libRadiance.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Accelerate, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vImage.framework/Versions/A/vImage, cpu-sub- 
type: 0
dyld: loaded: /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib, cpu-sub- 
type: 0
dyld: loaded: /System/Library/Frameworks/Carbon.framework/Versions/A/ 
Frameworks/CarbonSound.framework/Versions/A/CarbonSound, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/CoreAudio.framework/Versions/ 
A/CoreAudio, cpu-sub-type: 0
dyld: loaded: /usr/lib/libsqlite3.0.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/ 
OpenGL, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/ 
Libraries/libGLImage.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/ 
Libraries/libGLU.dylib, cpu-sub-type: 0
dyld: loaded: /System/Library/Frameworks/OpenGL.framework/Versions/A/ 
Libraries/libGL.dylib, cpu-sub-type: 0
Error in dyn.load(x, as.logical(local), as.logical(now)) :
         unable to load shared library '/Library/Frameworks/ 
R.framework/Resources/library/grDevices/libs/ppc/grDevices.so':
   dlopen(/Library/Frameworks/R.framework/Resources/library/grDevices/ 
libs/ppc/grDevices.so, 6): Symbol not found: ___eprintf
   Referenced from: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
   Expected in: /Library/Frameworks/R.framework/Resources/lib/libstdc+ 
+.6.dylib
Loading required package: grDevices
dyld: loaded: /Library/Frameworks/R.framework/Resources/library/ 
grDevices/libs/ppc/grDevices.so
Error in dyn.load(x, as.logical(local), as.logical(now)) :
         unable to load shared library '/Library/Frameworks/ 
R.framework/Resources/library/grDevices/libs/ppc/grDevices.so':
   dlopen(/Library/Frameworks/R.framework/Resources/library/grDevices/ 
libs/ppc/grDevices.so, 6): Symbol not found: ___eprintf
   Referenced from: /System/Library/Frameworks/CoreServices.framework/ 
Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
   Expected in: /Library/Frameworks/R.framework/Resources/lib/libstdc+ 
+.6.dylib
In addition: Warning message:
package grDevices in options("defaultPackages") was not found
Error: package 'grDevices' could not be loaded
 >
 > Sys.getenv("DYLD_LIBRARY_PATH")
                                DYLD_LIBRARY_PATH
"/Library/Frameworks/R.framework/Resources/lib:"

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