[R-SIG-Mac] R 2.1.1 available in DarwinPorts

[elijah wright]

> At some point port just started noticing when cc_dynamic is required and 
> linking against it.  Until yesterday I thought this was a "feature" but 
> maybe it's just a (lucky) misconfiguration somewhere in my system. 
> (For a brief period I was using gcc 4.0 to to compile and cc_dynamic was 
> not necessary - when I reverted to 3.3 I didn't put cc-dynamic in the 
> Portfile because it was already being found.)
>
> Anyway, let me know if updating solves the problem.


i'm up to date now.  and i just updated libiconv from 1.09 to 1.10 -- 
which is a little tricky, since you have to deactivate one in order for 
the other to build successfully.  [libiconv port bug?]

here's what happens when i try to do a `port install R` now:

gcc-3.3 -I../../src/extra/zlib -I../../src/extra/bzip2 
-I../../src/extra/pcre  -no-cpp-precomp -I. -I../../src/include 
-I../../src/include -I/opt/local/include -DHAVE_CONFIG_H  -fno-common  -g 
-O2 -c vfonts.c -o vfonts.lo
g77-dp-3.4  -fno-common  -g -O2 -c xxxpr.f -o xxxpr.lo
gcc-3.3 -dynamiclib -L/opt/local/lib -dynamiclib -install_name libR.dylib 
-compatibility_version 2.1.0  -current_version 2.1.1 
-headerpad_max_install_names -o libR.dylib  Rembedded.lo CConverters.lo 
CommandLineArgs.lo Rdynload.lo Renviron.lo RNG.lo apply.lo arithmetic.lo 
apse.lo array.lo attrib.lo base.lo bind.lo builtin.lo character.lo 
coerce.lo colors.lo complex.lo connections.lo context.lo cov.lo cum.lo 
dcf.lo datetime.lo debug.lo deparse.lo deriv.lo dotcode.lo dounzip.lo 
dstruct.lo duplicate.lo engine.lo envir.lo errors.lo eval.lo format.lo 
fourier.lo gevents.lo gram.lo gram-ex.lo graphics.lo identical.lo 
internet.lo iosupport.lo lapack.lo list.lo logic.lo main.lo mapply.lo 
match.lo memory.lo model.lo names.lo objects.lo optim.lo optimize.lo 
options.lo par.lo paste.lo pcre.lo platform.lo plot.lo plot3d.lo 
plotmath.lo print.lo printarray.lo printvector.lo printutils.lo qsort.lo 
random.lo regex.lo registration.lo relop.lo saveload.lo scan.lo seq.lo 
serialize.lo size.lo sort.lo source.lo split.lo sprintf.lo startup.lo 
subassign.lo subscript.lo subset.lo summary.lo sysutils.lo unique.lo 
util.lo version.lo vfonts.lo xxxpr.lo `ls ../appl/*.lo ../nmath/*.lo 
../unix/*.lo  2>/dev/null` -framework vecLib 
-L/opt/local/lib/gcc-3.4/gcc/powerpc-apple-darwin8.2.0/3.4.4 
-L/opt/local/lib/gcc-3.4 -lg2c -lgcc_s -lSystemStubs -lSystem 
../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a 
-lintl -liconv -lc  -lreadline  -lm -liconv
ld: warning prebinding disabled because dependent library: 
/opt/local/lib/gcc-3.4/libg2c.0.dylib is not prebound
ld: warning multiple definitions of symbol _xerbla_
print.lo definition of _xerbla_ in section (__TEXT,__text)
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib(single 
module) definition of _xerbla_
ld: warning multiple definitions of symbol _locale_charset
/opt/local/lib/libiconv.dylib(localcharset.o) definition of 
_locale_charset
/opt/local/lib/libintl.dylib(localcharset.o) definition of _locale_charset
ld: warning multiple definitions of symbol _signgam
../nmath/lgamma.lo definition of _signgam in section (__DATA,__common)
/usr/lib/libSystem.dylib(gamma9.o) definition of _signgam
ld: Undefined symbols:
restFP
saveFP
/usr/bin/libtool: internal link edit command failed
make[3]: *** [libR.dylib] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1



i gotta run to class now, but will try to follow up afterwards.

--elijah


>>> Subject: Re: [R-SIG-Mac] R 2.1.1 available in DarwinPorts
>>> I just tried building from darwin ports today, and got the error below 
>>> while bulding R.  To confirm, this is for darwin ports on Tiger, right? 
>>> Any help appreciated, looks like there is some kind of symbol conflict.
>>> 
>> 
>> i got the same error when i tried a build a couple of days ago -- i hadn't 
>> had time to get back to it yet.  [and i have a radmind overload of 
>> darwinports that contains a working R (from previous build attempt), so i 
>> wasn't in a hurry to break it either...]
>> 
>> Kjell, are there things we can do to help you?  Other than to continue 
>> testing?  :)
>> 
>> --elijah
>> 
>> 
>> 
>>> gcc-3.3 -dynamiclib -L/opt/local/lib -dynamiclib -install_name
>>> libR.dylib -compatibility_version 2.1.0  -current_version 2.1.1  -
>>> headerpad_max_install_names -o libR.dylib  Rembedded.lo
>>> CConverters.lo CommandLineArgs.lo Rdynload.lo Renviron.lo RNG.lo
>>> apply.lo arithmetic.lo apse.lo array.lo attrib.lo base.lo bind.lo
>>> builtin.lo character.lo coerce.lo colors.lo complex.lo connections.lo
>>> context.lo cov.lo cum.lo dcf.lo datetime.lo debug.lo deparse.lo
>>> deriv.lo dotcode.lo dounzip.lo dstruct.lo duplicate.lo engine.lo
>>> envir.lo errors.lo eval.lo format.lo fourier.lo gevents.lo gram.lo
>>> gram-ex.lo graphics.lo identical.lo internet.lo iosupport.lo
>>> lapack.lo list.lo logic.lo main.lo mapply.lo match.lo memory.lo
>>> model.lo names.lo objects.lo optim.lo optimize.lo options.lo par.lo
>>> paste.lo pcre.lo platform.lo plot.lo plot3d.lo plotmath.lo print.lo
>>> printarray.lo printvector.lo printutils.lo qsort.lo random.lo
>>> regex.lo registration.lo relop.lo saveload.lo scan.lo seq.lo
>>> serialize.lo size.lo sort.lo source.lo split.lo sprintf.lo startup.lo
>>> subassign.lo subscript.lo subset.lo summary.lo sysutils.lo unique.lo
>>> util.lo version.lo vfonts.lo xxxpr.lo `ls ../appl/*.lo ../nmath/
>>> *.lo ../unix/*.lo  2>/dev/null` -framework vecLib -L/opt/local/lib/
>>> gcc-3.4/gcc/powerpc-apple-darwin8.2.0/3.4.4 -L/opt/local/lib/gcc-3.4 -
>>> lg2c -lgcc_s -lSystemStubs -lSystem  ../extra/zlib/libz.a ../extra/
>>> bzip2/libbz2.a ../extra/pcre/libpcre.a  -lintl -liconv -lc  -
>>> lreadline  -lm -liconv
>
>
> Here is cc_dynamic, right between readline and math:
>
> gcc-3.3 -dynamiclib -L/opt/local/lib -dynamiclib -install_name libR.dylib 
> -compatibility_version 2.1.0  -current_version 2.1.1 
> -headerpad_max_install_names -o libR.dylib  Rembedded.lo CConverters.lo 
> CommandLineArgs.lo Rdynload.lo Renviron.lo RNG.lo apply.lo arithmetic.lo 
> apse.lo array.lo attrib.lo base.lo bind.lo builtin.lo character.lo coerce.lo 
> colors.lo complex.lo connections.lo context.lo cov.lo cum.lo dcf.lo 
> datetime.lo debug.lo deparse.lo deriv.lo dotcode.lo dounzip.lo dstruct.lo 
> duplicate.lo engine.lo envir.lo errors.lo eval.lo format.lo fourier.lo 
> gevents.lo gram.lo gram-ex.lo graphics.lo identical.lo internet.lo 
> iosupport.lo lapack.lo list.lo logic.lo main.lo mapply.lo match.lo memory.lo 
> model.lo names.lo objects.lo optim.lo optimize.lo options.lo par.lo paste.lo 
> pcre.lo platform.lo plot.lo plot3d.lo plotmath.lo print.lo printarray.lo 
> printvector.lo printutils.lo qsort.lo random.lo regex.lo registration.lo 
> relop.lo saveload.lo scan.lo seq.lo serialize.lo size.lo sort.lo source.lo 
> split.lo sprintf.lo startup.lo subassign.lo subscript.lo subset.lo summary.lo 
> sysutils.lo unique.lo util.lo version.lo vfonts.lo xxxpr.lo `ls ../appl/*.lo 
> ../nmath/*.lo ../unix/*.lo  2>/dev/null` -framework vecLib 
> -L/Volumes/muffin/DarwinPorts/lib/gcc-3.4/gcc/powerpc-apple-darwin8.2.0/3.4.4 
> -L/Volumes/muffin/DarwinPorts/lib/gcc-3.4/gcc 
> -L/Volumes/muffin/DarwinPorts/lib/gcc-3.4 -lg2c -lgcc_s -lSystemStubs 
> -lSystem  ../extra/zlib/libz.a ../extra/bzip2/libbz2.a 
> ../extra/pcre/libpcre.a  -lintl -liconv -lc  -lreadline  -lcc_dynamic -lm 
> -liconv