[R-SIG-Mac] R.app crash report
ap_llywelyn at mac.com
ap_llywelyn at mac.com
Sun Dec 5 03:50:08 CET 2004
I was doing some stress tests and came across a handful of issues.
Version: R 2.0.1 downloaded from CRAN, standard install. Using 3
December 2004 version of R.app from (
http://www.rosuda.org/R/nightly/other/R-GUI.dmg ).
All tests done on a 12" PowerBook G4 (original) with 640 MB of RAM.
------------------
Source code leading to crash:
library(cluster)
data(xclara)
plot(hclust(dist(xclara)))
This leads to a long wait where the application is frozen (spinning
status bar going the entire time), a quartz window displays without any
content, and then the following application crash occurs:
Date/Time: 2004-12-04 20:15:00 -0600
OS Version: 10.3.6 (Build 7R28)
Report Version: 2
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Version: 1.02-pre build 795 (1.02-pre build 795)
PID: 1654
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_INVALID_ADDRESS (0x0001) at 0x049b2940
Thread 0 Crashed:
0 libR.dylib 0x010bd2ec drawdend + 0x168 (plot.c:3358)
1 libR.dylib 0x010bd1e8 drawdend + 0x64 (plot.c:3346)
2 libR.dylib 0x010bd2bc drawdend + 0x138 (plot.c:3356)
3 libR.dylib 0x010bd2bc drawdend + 0x138 (plot.c:3356)
4 libR.dylib 0x010bd1e8 drawdend + 0x64 (plot.c:3346)
5 libR.dylib 0x010bd2bc drawdend + 0x138 (plot.c:3356)
6 libR.dylib 0x010bd2bc drawdend + 0x138 (plot.c:3356)
7 libR.dylib 0x010bd1e8 drawdend + 0x64 (plot.c:3346)
8 libR.dylib 0x010bd660 do_dend + 0x278 (plot.c:3438)
9 libR.dylib 0x0109f670 do_internal + 0x170
(names.c:1067)
10 libR.dylib 0x0106bf9c Rf_eval + 0x428 (eval.c:376)
11 libR.dylib 0x0106d894 do_begin + 0x88 (eval.c:1051)
12 libR.dylib 0x0106bf9c Rf_eval + 0x428 (eval.c:376)
13 libR.dylib 0x0106c5e0 Rf_applyClosure + 0x3b8
(eval.c:570)
14 libR.dylib 0x0109fb04 applyMethod + 0x1d8
(objects.c:119)
15 libR.dylib 0x010a020c Rf_usemethod + 0x420
(objects.c:300)
16 libR.dylib 0x010a05e0 do_usemethod + 0x1f4
(objects.c:389)
17 libR.dylib 0x0106bf9c Rf_eval + 0x428 (eval.c:376)
18 libR.dylib 0x0106bf9c Rf_eval + 0x428 (eval.c:376)
19 libR.dylib 0x0106d894 do_begin + 0x88 (eval.c:1051)
20 libR.dylib 0x0106bf9c Rf_eval + 0x428 (eval.c:376)
21 libR.dylib 0x0106c5e0 Rf_applyClosure + 0x3b8
(eval.c:570)
22 libR.dylib 0x0106c1c8 Rf_eval + 0x654 (eval.c:411)
23 libR.dylib 0x010918ec Rf_ReplIteration + 0x1d0
(main.c:253)
24 libR.dylib 0x01091a48 R_ReplConsole + 0x88
(main.c:302)
25 libR.dylib 0x010923bc run_Rmainloop + 0x6c
(main.c:656)
26 com.apple.Foundation 0x909f30e4 __NSFireTimer + 0x68
27 com.apple.CoreFoundation 0x90194620 __CFRunLoopDoTimer + 0xf4
28 com.apple.CoreFoundation 0x90191980 __CFRunLoopRun + 0x5c8
29 com.apple.CoreFoundation 0x90195e94 CFRunLoopRunSpecific + 0x148
30 com.apple.HIToolbox 0x927d5f88 RunCurrentEventLoopInMode +
0xac
31 com.apple.HIToolbox 0x927dc6f0 ReceiveNextEventCommon + 0x17c
32 com.apple.HIToolbox 0x927fe6c8
BlockUntilNextEventMatchingListInMode + 0x60
33 com.apple.AppKit 0x92dd227c _DPSNextEvent + 0x180
34 com.apple.AppKit 0x92de8c24 -[NSApplication
nextEventMatchingMask:untilDate:inMode:dequeue:] + 0x74
35 com.apple.AppKit 0x92dfcf8c -[NSApplication run] + 0x21c
36 com.apple.AppKit 0x92eb948c NSApplicationMain + 0x1d0
37 org.R-project.R 0x000029c8 _start + 0x188 (crt.c:267)
38 dyld 0x8fe1a558 _dyld_start + 0x64
Thread 1:
0 libSystem.B.dylib 0x9000b20c select + 0xc
1 org.R-project.R 0x00003b30 -[RController readThread:] +
0x1b4
2 com.apple.Foundation 0x90a39b74 forkThreadForFunction + 0x6c
3 libSystem.B.dylib 0x900246e8 _pthread_body + 0x28
Thread 2:
0 libSystem.B.dylib 0x90012568 syscall_thread_switch + 0x8
1 com.apple.Foundation 0x90a029c8 +[NSThread sleepUntilDate:] +
0x98
2 com.apple.AppKit 0x92dca420 -[NSUIHeartBeat
_heartBeatThread:] + 0x494
3 com.apple.Foundation 0x90a39b74 forkThreadForFunction + 0x6c
4 libSystem.B.dylib 0x900246e8 _pthread_body + 0x28
PPC Thread State:
srr0: 0x010bd2ec srr1: 0x0200f030 vrsave: 0x00000000
cr: 0x24022286 xer: 0x20000004 lr: 0x010bd294 ctr: 0x900f5f70
r0: 0x010bd294 r1: 0xbfffb7c0 r2: 0x049b2948 r3: 0x00000b26
r4: 0x00000000 r5: 0xa09faf40 r6: 0xbfffb234 r7: 0x05175200
r8: 0x00000464 r9: 0x049ad018 r10: 0x00000118 r11: 0x24022282
r12: 0x900f5f70 r13: 0x011cc51c r14: 0x0118fdf4 r15: 0x05428acc
r16: 0x01e09588 r17: 0x05188f10 r18: 0x0189a4e8 r19: 0x01e095f8
r20: 0x05428a94 r21: 0x00000017 r22: 0x00000bb8 r23: 0x011bcb38
r24: 0x00000bb7 r25: 0x0189761c r26: 0x05427748 r27: 0xbfffb940
r28: 0xbfffb948 r29: 0x0035d450 r30: 0x000023f8 r31: 0x010bd18c
Binary Images Description:
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(???) /System/Library/Frameworks/ApplicationServices.framework/
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/System/Library/Frameworks/ApplicationServices.framework/Versions/A/
Frameworks/ATS.framework/Versions/A/ATS
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125.8.10 /System/Library/Frameworks/WebKit.framework/Versions/A/
Frameworks/WebCore.framework/Versions/A/WebCore
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(12) /System/Library/PrivateFrameworks/SecurityNssAsn1.framework/
Versions/A/SecurityNssAsn1
0x97510000 - 0x97518fff libbsm.dylib /usr/lib/libbsm.dylib
dist(xclara)->xclara.dist
Works okay, though when attempting to display those results it freezes
up the entire system, probably as the result of memory
threshing/starvation if the top results are any indicator:
1661 R 8.5% 9:36.12 3 92 567 368M+ 3.88M 350M-
828M
Sincerely,
David
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