[R-sig-hpc] Fwd: cannot install ncdf4_1.6.1 in R-3.0.0 on Cray XE6 HERMIT (R-sig-hpc Digest, Vol 56, Issue 4)

[Martin Ivanov]

Dear Pragnesh,
I turned out I had to use the newest versions of the available netcdf 
libraries to compile ncdf (netcdf-hdf5parallel/4.2.0).
With netcdf-4.1.1.0 compilation is never successful. Now I have a 
problem compiling pbdMPI, which I descripe in a separate thread.

Many thanks for Your support.

Best regards,
Martin


On 05/08/2013 09:23 PM, Pragnesh Patel wrote:
> ---------- Forwarded message ----------
> From: Pragnesh Patel <pragnesh777 at gmail.com>
> Date: Wed, 8 May 2013 09:25:13 -0400
> Subject: Re: [R-sig-hpc] cannot install ncdf4_1.6.1 in R-3.0.0 on Cray
> XE6 HERMIT (R-sig-hpc Digest, Vol 56, Issue 4)
> To: George Ostrouchov <ostrouchovg at ornl.gov>
> Cc: Martin Ivanov <martin.ivanov at ifg.uni-tuebingen.de>, Drew Schmidt
> <schmidt at math.utk.edu>
>
> Hi Martin,
>
> Please follow below steps for HDF5 installation.
>
> ============================================
>
> make distclean
>
> ./configure --prefix=your home directory \
> --with-zlib=/usr \
> --with-szlib=$SZIP_DIR \
> --enable-fortran \
> --enable-cxx \
> --enable-parallel \
> --enable-shared
>
> =======================
> make all
>
>     # after failing to run newly compiled H5make_libsettings
> interactively with aprun. It works fine on backend.
>     # retry by compiling for frontend and then restart make
>
>     cd src
>     gcc -o H5make_libsettings H5make_libsettings.c
>     cd ..
>
>   make all
>
>      # after failing to run newly compiled H5detect interactively with
> aprun. It works fine on backend.
>      # retry by compiling for frontend and then restart make
>
>     cd src
>     gcc -o H5detect H5detect.c
>     ./H5detect > H5Tinit.c
>     cd ..
>
>     make all
> =======================
> make install
>
> ============================================
>
> Thanks
> Pragnesh
>
>
>
>
>
> On 5/7/13, George Ostrouchov <ostrouchovg at ornl.gov> wrote:
>> Hi Martin,
>>
>> Glad that we can help with your configuration. Pragnesh is our CS expert
>> on the pbdR project.
>>
>> Let me do a little advertising ...
>> If you will be at the UseR! conference this July in Albacete, Spain,
>> Drew and I are running a pbdR tutorial the day before the conference.
>> Please consider signing up. We have the most scalable infrastructure in R.
>>
>> Cheers,
>> George
>>
>> On 5/7/13 1:04 PM, Martin Ivanov wrote:
>>> Hello, Pragnesh,
>>>
>>> Thank You very much for Your responsiveness.
>>> Now I am trying to compile hdf5, but unsuccessfully.
>>> Here is my setting:
>>>
>>> --
>>> Dr. Martin Ivanov
>>> Eberhard-Karls-Universität Tübingen
>>> Mathematisch-Naturwissenschaftliche Fakultät
>>> Fachbereich Geowissenschaften
>>> Water & Earth System Science (WESS)
>>> Hölderlinstraße 12, 72074 Tübingen, Deutschland
>>> Tel. +4970712974213
>>>
>>> _______________________________________________
>>> R-sig-hpc mailing list
>>> R-sig-hpc at r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-hpc
>> --
>> George Ostrouchov, Ph.D.
>> Scientific Data Group
>> Computer Science and Mathematics Division
>> Oak Ridge National Laboratory
>> (865) 574-3137  http://www.csm.ornl.gov/~ost
>>
>>
>
>


-- 
Dr. Martin Ivanov
Eberhard-Karls-Universität Tübingen
Mathematisch-Naturwissenschaftliche Fakultät
Fachbereich Geowissenschaften
Water & Earth System Science (WESS)
Hölderlinstraße 12, 72074 Tübingen, Deutschland
Tel. +4970712974213