[R-sig-hpc] Fwd: cannot install ncdf4_1.6.1 in R-3.0.0 on Cray XE6 HERMIT (R-sig-hpc Digest, Vol 56, Issue 4)

[Pragnesh Patel]

---------- Forwarded message ----------
From: Pragnesh Patel <pragnesh777 at gmail.com>
Date: Wed, 8 May 2013 09:25:13 -0400
Subject: Re: [R-sig-hpc] cannot install ncdf4_1.6.1 in R-3.0.0 on Cray
XE6 HERMIT (R-sig-hpc Digest, Vol 56, Issue 4)
To: George Ostrouchov <ostrouchovg at ornl.gov>
Cc: Martin Ivanov <martin.ivanov at ifg.uni-tuebingen.de>, Drew Schmidt
<schmidt at math.utk.edu>

Hi Martin,

Please follow below steps for HDF5 installation.

============================================

make distclean

./configure --prefix=your home directory \
--with-zlib=/usr \
--with-szlib=$SZIP_DIR \
--enable-fortran \
--enable-cxx \
--enable-parallel \
--enable-shared

=======================
make all

   # after failing to run newly compiled H5make_libsettings
interactively with aprun. It works fine on backend.
   # retry by compiling for frontend and then restart make

   cd src
   gcc -o H5make_libsettings H5make_libsettings.c
   cd ..

 make all

    # after failing to run newly compiled H5detect interactively with
aprun. It works fine on backend.
    # retry by compiling for frontend and then restart make

   cd src
   gcc -o H5detect H5detect.c
   ./H5detect > H5Tinit.c
   cd ..

   make all
=======================
make install

============================================

Thanks
Pragnesh





On 5/7/13, George Ostrouchov <ostrouchovg at ornl.gov> wrote:
> Hi Martin,
>
> Glad that we can help with your configuration. Pragnesh is our CS expert
> on the pbdR project.
>
> Let me do a little advertising ...
> If you will be at the UseR! conference this July in Albacete, Spain,
> Drew and I are running a pbdR tutorial the day before the conference.
> Please consider signing up. We have the most scalable infrastructure in R.
>
> Cheers,
> George
>
> On 5/7/13 1:04 PM, Martin Ivanov wrote:
>> Hello, Pragnesh,
>>
>> Thank You very much for Your responsiveness.
>> Now I am trying to compile hdf5, but unsuccessfully.
>> Here is my setting:
>>
>> --
>> Dr. Martin Ivanov
>> Eberhard-Karls-Universität Tübingen
>> Mathematisch-Naturwissenschaftliche Fakultät
>> Fachbereich Geowissenschaften
>> Water & Earth System Science (WESS)
>> Hölderlinstraße 12, 72074 Tübingen, Deutschland
>> Tel. +4970712974213
>>
>> _______________________________________________
>> R-sig-hpc mailing list
>> R-sig-hpc at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-hpc
>
> --
> George Ostrouchov, Ph.D.
> Scientific Data Group
> Computer Science and Mathematics Division
> Oak Ridge National Laboratory
> (865) 574-3137  http://www.csm.ornl.gov/~ost
>
>



-- 
pragnesh patel
Graduate Student | Computer Science
Indiana University Bloomington