[R-sig-hpc] compiling R 2.15.0 to link to open MPI
Rodney Sparapani
rsparapa at mcw.edu
Wed Apr 11 16:49:19 CEST 2012
Rodney Sparapani wrote:
> Hi Jim:
>
> Well, from my experience, you don't link OpenMPI/MPICH2/etc. with the
> R binary per se. You build R the usual way. And, then you do an
> R CMD INSTALL Rmpi.tgz
>
> At that stage, you will need to be concerned with whether the
> appropriate headers and libraries exist. This step will give somewhat
> informative feedback about that.
>
> Rodney
I should also add that there is a clever trick that appeared here; and
maybe this is what you were missing. At the beginning of your R shell
script you may need something like...
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
Rodney
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