[R-sig-Geo] Species distribution modeling with presence-only data using log-Gaussian Cox process

[Manuel Spínola]

Thank you very much Edzer.

Manuel

El mar, 9 feb 2021 a las 14:18, Edzer Pebesma (<
edzer.pebesma using uni-muenster.de>) escribió:

> A  way out of this may be to make a local copy of the lgcp sources,
> remove the rpanel dependency from DESCRIPTION, and install it from
> there. You won't get the functions that need rpanel, but those might not
> be essential.
>
> On 09/02/2021 20:09, Manuel Spínola wrote:
> > Thank you very much Edzer.
> >
> > I tried to install lgcp, but I got an error message regarding BWidget.
> > I think that Bwidget is an external software and I don't know how to
> > install it in MacOS (Big Sur 11.2).
> >
> > Manuel
> >
> > This is the error that I get when trying to install lgcp in R 4.0.3:
> >
> > xcrun: error: invalid active developer path
> > (/Library/Developer/CommandLineTools), missing xcrun at:
> > /Library/Developer/CommandLineTools/usr/bin/xcrun
> > Warning message:
> > In system2("/usr/bin/otool", c("-L", shQuote(DSO)), stdout = TRUE) :
> >    running command ''/usr/bin/otool' -L
> >
> '/Library/Frameworks/R.framework/Resources/library/tcltk/libs//tcltk.so''
> had
> > status 1
> > Error in structure(.External(.C_dotTcl, ...), class = "tclObj") :
> >    [tcl] can't find package BWidget.
> >
> > Error: unable to load R code in package ‘rpanel’
> > Execution halted
> >
> > El mar, 9 feb 2021 a las 12:51, Edzer Pebesma
> > (<edzer.pebesma using uni-muenster.de <mailto:edzer.pebesma using uni-muenster.de>>)
>
> > escribió:
> >
> >     Have you tried package lgcp?
> >
> >     On 09/02/2021 17:26, Manuel Spínola wrote:
> >      > Dear list members,
> >      >
> >      > I would like to know of any R package that can be used for
> >     modeling species
> >      > distribution with presence-only data using log-Gaussian Cox
> process.
> >      >
> >      > Manuel
> >      >
> >
> >     _______________________________________________
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> >
> >
> >
> > --
> > *Manuel Spínola, Ph.D.*
> > Instituto Internacional en Conservación y Manejo de Vida Silvestre
> > Universidad Nacional
> > Apartado 1350-3000
> > Heredia
> > COSTA RICA
> > mspinola using una.cr <mailto:mspinola using una.ac.cr>
> > mspinola10 using gmail.com <mailto:mspinola10 using gmail.com>
> > Teléfono: (506) 8706 - 4662
> > Personal website: Lobito de río
> > <https://sites.google.com/site/lobitoderio/>
> > Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>
>


-- 
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspinola using una.cr <mspinola using una.ac.cr>
mspinola10 using gmail.com
Teléfono: (506) 8706 - 4662
Personal website: Lobito de río <https://sites.google.com/site/lobitoderio/>
Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>

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