[R-sig-Geo] CRAN releases of sp, rgdal and rgeos
Ben Tupper
btupper @ending from bigelow@org
Mon Jun 11 22:06:23 CEST 2018
It's quite a selection of drivers, but my driver world has a short horizon.
> gdalDrivers()
name long_name create copy isRaster
1 AAIGrid Arc/Info ASCII Grid FALSE TRUE TRUE
2 ACE2 ACE2 FALSE FALSE TRUE
3 ADRG ARC Digitized Raster Graphics TRUE FALSE TRUE
4 AIG Arc/Info Binary Grid FALSE FALSE TRUE
5 AirSAR AirSAR Polarimetric Image FALSE FALSE TRUE
6 ARG Azavea Raster Grid format FALSE TRUE TRUE
7 BAG Bathymetry Attributed Grid FALSE FALSE TRUE
8 BIGGIF Graphics Interchange Format (.gif) FALSE FALSE TRUE
9 BLX Magellan topo (.blx) FALSE TRUE TRUE
10 BMP MS Windows Device Independent Bitmap TRUE FALSE TRUE
11 BSB Maptech BSB Nautical Charts FALSE FALSE TRUE
12 BT VTP .bt (Binary Terrain) 1.3 Format TRUE FALSE TRUE
13 CALS CALS (Type 1) FALSE TRUE TRUE
14 CEOS CEOS Image FALSE FALSE TRUE
15 COASP DRDC COASP SAR Processor Raster FALSE FALSE TRUE
16 COSAR COSAR Annotated Binary Matrix (TerraSAR-X) FALSE FALSE TRUE
17 CPG Convair PolGASP FALSE FALSE TRUE
18 CTable2 CTable2 Datum Grid Shift TRUE FALSE TRUE
19 CTG USGS LULC Composite Theme Grid FALSE FALSE TRUE
20 DIMAP SPOT DIMAP FALSE FALSE TRUE
21 DIPEx DIPEx FALSE FALSE TRUE
22 DOQ1 USGS DOQ (Old Style) FALSE FALSE TRUE
23 DOQ2 USGS DOQ (New Style) FALSE FALSE TRUE
24 DTED DTED Elevation Raster FALSE TRUE TRUE
25 E00GRID Arc/Info Export E00 GRID FALSE FALSE TRUE
26 ECRGTOC ECRG TOC format FALSE FALSE TRUE
27 EHdr ESRI .hdr Labelled TRUE TRUE TRUE
28 EIR Erdas Imagine Raw FALSE FALSE TRUE
29 ELAS ELAS TRUE FALSE TRUE
30 ENVI ENVI .hdr Labelled TRUE FALSE TRUE
31 ERS ERMapper .ers Labelled TRUE FALSE TRUE
32 ESAT Envisat Image Format FALSE FALSE TRUE
33 FAST EOSAT FAST Format FALSE FALSE TRUE
34 FIT FIT Image FALSE TRUE TRUE
35 FujiBAS Fuji BAS Scanner Image FALSE FALSE TRUE
36 GenBin Generic Binary (.hdr Labelled) FALSE FALSE TRUE
37 GFF Ground-based SAR Applications Testbed File Format (.gff) FALSE FALSE TRUE
38 GIF Graphics Interchange Format (.gif) FALSE TRUE TRUE
39 GMT GMT NetCDF Grid Format FALSE TRUE TRUE
40 GPKG GeoPackage TRUE TRUE TRUE
41 GRASSASCIIGrid GRASS ASCII Grid FALSE FALSE TRUE
42 GRIB GRIdded Binary (.grb) FALSE FALSE TRUE
43 GS7BG Golden Software 7 Binary Grid (.grd) TRUE TRUE TRUE
44 GSAG Golden Software ASCII Grid (.grd) FALSE TRUE TRUE
45 GSBG Golden Software Binary Grid (.grd) TRUE TRUE TRUE
46 GSC GSC Geogrid FALSE FALSE TRUE
47 GTiff GeoTIFF TRUE TRUE TRUE
48 GTX NOAA Vertical Datum .GTX TRUE FALSE TRUE
49 GXF GeoSoft Grid Exchange Format FALSE FALSE TRUE
50 HDF5 Hierarchical Data Format Release 5 FALSE FALSE TRUE
51 HDF5Image HDF5 Dataset FALSE FALSE TRUE
52 HF2 HF2/HFZ heightfield raster FALSE TRUE TRUE
53 HFA Erdas Imagine Images (.img) TRUE TRUE TRUE
54 HTTP HTTP Fetching Wrapper FALSE FALSE TRUE
55 IDA Image Data and Analysis TRUE FALSE TRUE
56 ILWIS ILWIS Raster Map TRUE TRUE TRUE
57 INGR Intergraph Raster TRUE TRUE TRUE
58 IRIS IRIS data (.PPI, .CAPPi etc) FALSE FALSE TRUE
59 ISCE ISCE raster TRUE FALSE TRUE
60 ISIS2 USGS Astrogeology ISIS cube (Version 2) TRUE FALSE TRUE
61 ISIS3 USGS Astrogeology ISIS cube (Version 3) FALSE FALSE TRUE
62 JAXAPALSAR JAXA PALSAR Product Reader (Level 1.1/1.5) FALSE FALSE TRUE
63 JDEM Japanese DEM (.mem) FALSE FALSE TRUE
64 JPEG JPEG JFIF FALSE TRUE TRUE
65 KMLSUPEROVERLAY Kml Super Overlay FALSE TRUE TRUE
66 KRO KOLOR Raw TRUE FALSE TRUE
67 L1B NOAA Polar Orbiter Level 1b Data Set FALSE FALSE TRUE
68 LAN Erdas .LAN/.GIS TRUE FALSE TRUE
69 LCP FARSITE v.4 Landscape File (.lcp) FALSE TRUE TRUE
70 Leveller Leveller heightfield TRUE FALSE TRUE
71 LOSLAS NADCON .los/.las Datum Grid Shift FALSE FALSE TRUE
72 MAP OziExplorer .MAP FALSE FALSE TRUE
73 MBTiles MBTiles TRUE TRUE TRUE
74 MEM In Memory Raster TRUE FALSE TRUE
75 MFF Vexcel MFF Raster TRUE TRUE TRUE
76 MFF2 Vexcel MFF2 (HKV) Raster TRUE TRUE TRUE
77 MRF Meta Raster Format TRUE TRUE TRUE
78 MSGN EUMETSAT Archive native (.nat) FALSE FALSE TRUE
79 NDF NLAPS Data Format FALSE FALSE TRUE
80 netCDF Network Common Data Format TRUE TRUE TRUE
81 NGSGEOID NOAA NGS Geoid Height Grids FALSE FALSE TRUE
82 NITF National Imagery Transmission Format TRUE TRUE TRUE
83 NTv2 NTv2 Datum Grid Shift TRUE FALSE TRUE
84 NWT_GRC Northwood Classified Grid Format .grc/.tab FALSE FALSE TRUE
85 NWT_GRD Northwood Numeric Grid Format .grd/.tab FALSE FALSE TRUE
86 OZI OziExplorer Image File FALSE FALSE TRUE
87 PAux PCI .aux Labelled TRUE FALSE TRUE
88 PCIDSK PCIDSK Database File TRUE FALSE TRUE
89 PCRaster PCRaster Raster File TRUE TRUE TRUE
90 PDF Geospatial PDF TRUE TRUE TRUE
91 PDS NASA Planetary Data System FALSE FALSE TRUE
92 PLMOSAIC Planet Labs Mosaics API FALSE FALSE TRUE
93 PLSCENES Planet Labs Scenes API FALSE FALSE TRUE
94 PNG Portable Network Graphics FALSE TRUE TRUE
95 PNM Portable Pixmap Format (netpbm) TRUE FALSE TRUE
96 R R Object Data Store FALSE TRUE TRUE
97 Rasterlite Rasterlite FALSE TRUE TRUE
98 RIK Swedish Grid RIK (.rik) FALSE FALSE TRUE
99 RMF Raster Matrix Format TRUE FALSE TRUE
100 ROI_PAC ROI_PAC raster TRUE FALSE TRUE
101 RPFTOC Raster Product Format TOC format FALSE FALSE TRUE
102 RS2 RadarSat 2 XML Product FALSE FALSE TRUE
103 RST Idrisi Raster A.1 TRUE TRUE TRUE
104 SAFE Sentinel-1 SAR SAFE Product FALSE FALSE TRUE
105 SAGA SAGA GIS Binary Grid (.sdat) TRUE TRUE TRUE
106 SAR_CEOS CEOS SAR Image FALSE FALSE TRUE
107 SDTS SDTS Raster FALSE FALSE TRUE
108 SENTINEL2 Sentinel 2 FALSE FALSE TRUE
109 SGI SGI Image File Format 1.0 TRUE FALSE TRUE
110 SNODAS Snow Data Assimilation System FALSE FALSE TRUE
111 SRP Standard Raster Product (ASRP/USRP) FALSE FALSE TRUE
112 SRTMHGT SRTMHGT File Format FALSE TRUE TRUE
113 Terragen Terragen heightfield TRUE FALSE TRUE
114 TIL EarthWatch .TIL FALSE FALSE TRUE
115 TSX TerraSAR-X Product FALSE FALSE TRUE
116 USGSDEM USGS Optional ASCII DEM (and CDED) FALSE TRUE TRUE
117 VICAR MIPL VICAR file FALSE FALSE TRUE
118 VRT Virtual Raster TRUE TRUE TRUE
119 WCS OGC Web Coverage Service FALSE FALSE TRUE
120 WMS OGC Web Map Service FALSE TRUE TRUE
121 WMTS OGC Web Mab Tile Service FALSE TRUE TRUE
122 XPM X11 PixMap Format FALSE TRUE TRUE
123 XYZ ASCII Gridded XYZ FALSE TRUE TRUE
124 ZMap ZMap Plus Grid FALSE TRUE TRUE
> On Jun 11, 2018, at 3:54 PM, Roger Bivand <Roger.Bivand using nhh.no> wrote:
>
> On Mon, 11 Jun 2018, Ben Tupper wrote:
>
>> Hi,
>>
>> I used CRAN binary ala ...
>>
>>> install.packages("rgdal")
>>
>> I used that same for sp and rgeos.
>
> Good, thanks. They probably do not have the very latest versions of the external dependencies, but do work and provide a reasonable selection of GDAL drivers.
>
> Roger
>
>>
>> Ben
>>
>>
>>> On Jun 11, 2018, at 3:45 PM, Roger Bivand <Roger.Bivand using nhh.no> wrote:
>>>
>>> On Mon, 11 Jun 2018, Ben Tupper wrote:
>>>
>>>> Hi,
>>>>
>>>> I have been able to install all three without issue. I have encountered no issues with usage.
>>>
>>> Ben,
>>>
>>> Thanks for this report. How did you install rgdal - CRAN binary (now at 1.3.2 for R 3.5.0) or source install using GDAL and PROJ installed in what way? It's useful to record ways in which installation on OSX has been accomplished.
>>>
>>> Roger
>>>
>>>
>>>
>>>>
>>>>> sessionInfo()
>>>> R version 3.5.0 (2018-04-23)
>>>> Platform: x86_64-apple-darwin15.6.0 (64-bit)
>>>> Running under: macOS Sierra 10.12.6
>>>>
>>>> Matrix products: default
>>>> BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
>>>> LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
>>>>
>>>> locale:
>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>>
>>>> attached base packages:
>>>> [1] stats graphics grDevices utils datasets methods base
>>>>
>>>> other attached packages:
>>>> [1] rgeos_0.3-28 rgdal_1.3-2 sp_1.3-1
>>>>
>>>> loaded via a namespace (and not attached):
>>>> [1] compiler_3.5.0 tools_3.5.0 grid_3.5.0 lattice_0.20-35
>>>>
>>>> Thanks for all you do!
>>>>
>>>> Cheers,
>>>> Ben
>>>>
>>>>
>>>>> On Jun 11, 2018, at 3:53 AM, Roger Bivand <Roger.Bivand using nhh.no> wrote:
>>>>>
>>>>> On Mon, 11 Jun 2018, Gilles Benjamin Leduc wrote:
>>>>>
>>>>>> Good monday!
>>>>>>
>>>>>> I tried to update rgdal, I get a warning telling me the installation had a non-null exit status. I haven't cheak if it was working…
>>>>>
>>>>> Thanks for responding - every user data point helps!
>>>>>
>>>>> Could you please provide the output of sessionInfo(), and any error messages you see on trying to update?
>>>>>
>>>>> Roger
>>>>>
>>>>>>
>>>>>> Benjamin
>>>>>>
>>>>>>
>>>>>> Le Vendredi 8 Juin 2018 18:15 GMT, Roger Bivand <Roger.Bivand using nhh.no> a écrit:
>>>>>>
>>>>>>> There are new releases of sp, rgdal and rgeos on CRAN. Please install sp
>>>>>>> first, then the other two, which link to the installed sp. They all
>>>>>>
>>>>>>> address so-called rchk issues, which have not so far been a problem, but
>>>>>>> might have become more fragile as R's internal memory management is made
>>>>>>> even more efficient. This involves compiled code using memory allocated by
>>>>>>> R to be freed by R's garbage collector, which has to know if an object is
>>>>>>> still being used. Tomas Kalibera, the author of rchk, helped resolve and
>>>>>>> explain the issues encountered - what was good coding practice fifteen
>>>>>>> years ago isn't always still good practice.
>>>>>>>
>>>>>>> In addition, the earliest versions of GDAL and PROJ with which rgdal will
>>>>>>> work have been updated, and set to PROJ 4.8.0 and GDAL 1.11.4. The current
>>>>>>> released versions of PROJ and GDAL are to be prefered, as bugs have been
>>>>>>> fixed and new features and drivers introduced. A check has been put
>>>>>>
>>>>>>> in place to trap attempts to install rgdal without a C++11-capable
>>>>>>> compiler when the GDAL version is >=2.3.0 - which requires C++11. rgeos is
>>>>>>> ready for the forthcoming version of GEOS.
>>>>>>>
>>>>>>> The CRAN team has also been very supportive of our efforts to bring
>>>>>>
>>>>>>> compiled code in these packages into rchk compliance.
>>>>>>>
>>>>>>> Please get in touch if you see any loose ends in these releases.
>>>>>>>
>>>>>>> Roger
>>>>>>>
>>>>>>> --
>>>>>>> Roger Bivand
>>>>>>> Department of Economics, Norwegian School of Economics,
>>>>>>> Helleveien 30, N-5045 Bergen, Norway.
>>>>>>> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
>>>>>>> http://orcid.org/0000-0003-2392-6140
>>>>>>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> R-sig-Geo mailing list
>>>>>>> R-sig-Geo using r-project.org
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>> --
>>>>> Roger Bivand
>>>>> Department of Economics, Norwegian School of Economics,
>>>>> Helleveien 30, N-5045 Bergen, Norway.
>>>>> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no <mailto:Roger.Bivand using nhh.no>
>>>>> http://orcid.org/0000-0003-2392-6140 <http://orcid.org/0000-0003-2392-6140>
>>>>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en_______________________________________________ <https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en_______________________________________________>
>>>>> R-sig-Geo mailing list
>>>>> R-sig-Geo using r-project.org <mailto:R-sig-Geo using r-project.org>
>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-geo <https://stat.ethz.ch/mailman/listinfo/r-sig-geo>
>>>> Ben Tupper
>>>> Bigelow Laboratory for Ocean Sciences
>>>> 60 Bigelow Drive, P.O. Box 380
>>>> East Boothbay, Maine 04544
>>>> http://www.bigelow.org
>>>>
>>>> Ecological Forecasting: https://eco.bigelow.org/
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>> --
>>> Roger Bivand
>>> Department of Economics, Norwegian School of Economics,
>>> Helleveien 30, N-5045 Bergen, Norway.
>>> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
>>> http://orcid.org/0000-0003-2392-6140
>>> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>>
>> Ben Tupper
>> Bigelow Laboratory for Ocean Sciences
>> 60 Bigelow Drive, P.O. Box 380
>> East Boothbay, Maine 04544
>> http://www.bigelow.org
>>
>> Ecological Forecasting: https://eco.bigelow.org/
>>
>>
>>
>>
>>
>>
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no <mailto:Roger.Bivand using nhh.no>
> http://orcid.org/0000-0003-2392-6140 <http://orcid.org/0000-0003-2392-6140>
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en <https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en>
Ben Tupper
Bigelow Laboratory for Ocean Sciences
60 Bigelow Drive, P.O. Box 380
East Boothbay, Maine 04544
http://www.bigelow.org
Ecological Forecasting: https://eco.bigelow.org/
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